Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq3 201 8e-47 >seq3 Length=2773601 Score = 201 bits (222), Expect = 8e-47 Identities = 512/766 (67%), Gaps = 31/766 (4%) Strand=Plus/Plus Query 101520 CATGTTATTTTTCTTAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTT 101579 ||| |||| || ||| || | ||| | ||| | ||| ||| || || ||||| || Sbjct 791296 CATATTATATTA-TTACACCGACATTTTCATCTCAATCTTAGATTGGGGTTTATATCCTT 791354 Query 101580 CTAATATAATGTCATC-TGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTA 101638 | | | || || || | ||| ||| |||||||| | | || ||| ||||| | Sbjct 791355 CGACAACAAAATCCTCATACTTGAAA-TCATCAATATCGGTGATATCTCTTGCAAAGCGC 791413 Query 101639 AGTGTTGGAAACGGTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCT 101698 || || || || | |||| |||| || | |||| ||| || || |||| || ||| Sbjct 791414 AGAGTAGGGAAGTCTGTAGGGGTTCTCGCAATTTGCACTTTGAGCGCTTCAACATGGTCT 791473 Query 101699 ACATAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATT--AGTGA 101756 | |||| |||||||| || || || || ||||| || ||| || | ||| | | Sbjct 791474 GCGTAGACATGAGCATCGCCCATTGTGTGAATAAAATCACCA--CATTCTATTCCACAAA 791531 Query 101757 CATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACC 101816 | | ||| ||||| ||||| | || ||| ||||| |||||||||||||| || | Sbjct 791532 CCTTAGCGATCATCTTCGTTAACAAAGCATAAGAGGCAATATTAAATGGCACTCCCAAGC 791591 Query 101817 CCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTT------CCATCACAGA--- 101867 |||||||| ||||||||| | ||||| ||||||| | |||| || || Sbjct 791592 CCATATCACAACTTCTTTGATATAACTGACAAGAAAGCTCTGGCTTACCATTACGGAAGC 791651 Query 101868 ---CATAAAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAA 101924 ||||||| ||| ||||| |||||||| || | |||| | || || | Sbjct 791652 TTACATAAAACTGAGAAAATACGTGACAAGGTGGAAGAGCCATATCGTTCATATCGGCGG 791711 Query 101925 CATTCCAAGCACACATTAACATCCTTCTATC-TGTAGGGT----TTGTTTTTATAGTATC 101979 |||||| || |||| | || | ||| || | | | || ||| |||| | ||||| Sbjct 791712 GATTCCATGCTGACATGATTATTCGTCTGTCATATGGTGTCTCCTTGATTTT-TCGTATC 791770 Query 101980 AATCAACTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACACCTTTATA 102039 | | ||| | ||| || ||||||| || ||||| | | | | ||| Sbjct 791771 ACTT--CTGCC--AGTTGATCTACTCCTTTACCAGAGTAATCAGTATCGCAATCCTCATA 791826 Query 102040 TTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCT 102099 || || || ||||| ||||| || || |||||||| |||||||||||||| ||| ||| Sbjct 791827 TTTGGCGCCAAAATGTCTCCATTGGAAACCATACACGGGTCCAAGATCTCCCTCACGTCT 791886 Query 102100 GTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCAC 102159 || | | || | || || ||||| || | |||||| |||||||||| || || Sbjct 791887 GTGTTCTAGTCCTCGCTTGTCCAAAAACTCTCGACTTCCATTGCCATCCCAAATATGAAC 791946 Query 102160 GCCAGCTG-CTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTT 102218 ||| ||| | || ||| ||| |||||||| ||| ||| |||||| || ||||||| Sbjct 791947 GCC-TCTGTCAGAAAGCAATTTCGAATCAGTAGACCCTTTGACAAACCATAATAGTTCTT 792005 Query 102219 CAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAA 102264 | | |||||| | || |||||| ||||||||||||||||| || Sbjct 792006 CCAAGACACCTTTGAAATATACTCGTTTAGTAGTTAAAAGTGGCAA 792051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361251182389004