Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 8e-16 >seq3 Length=2773601 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | || | ||| || |||||||||||||| ||||| | Sbjct 154575 CCACCACGGAGACGGAGAACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCGGAA 154516 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||| || || || || ||| | |||||||| || ||||| || Sbjct 154515 AGAGTACGACCATCCTCGAGTTGCTTACCAGCAAAGATAAGTCTTTGTTGGTCTGGAGGA 154456 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| || || | | | ||||||| || ||| | Sbjct 154455 ATACCCTCCTTGTCTTGGATCTTAGTCTTAACATTATCAATAGTATCAGAGGACTCGACT 154396 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||| || || || || |||||||| |||||||| Sbjct 154395 TCGAGGGTGATGGTCTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 154349 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | ||| || |||||||| ||||||||||| | Sbjct 155031 CCACCACGAAGACGGAGGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTATAGTCGGAG 154972 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || |||| |||| || || || || |||| | | ||| ||||| || Sbjct 154971 AGAGTACGGCCGTCTTCCAATTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGA 154912 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| ||||| || || | | ||| ||||||| || ||| | Sbjct 154911 ATACCTTCCTTGTCTTGAATCTTAGTCTTGACGTTGTCGATAGTATCAGAGGACTCGACT 154852 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||| ||||| || || || || ||||| || |||||||| Sbjct 154851 TCGAGAGTAATAGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 154805 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| || | |||||| |||||||||||||| || || | || |||| | | || Sbjct 154332 AGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGACAAGGTTCTGCCATCT 154273 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || | || || || ||| |||||||||| || ||||| || | ||||||||||| Sbjct 154272 TCTAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACCTTCCTTGTC- 154214 Query 21084 GCGATCTTTTGT-TTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 || ||| || || || | | | ||||||| || ||| ||| | |||||||| Sbjct 154213 TTGAATTTTGGTCTTAACATTATCAATAGTATCAGAGGACTCAACTTCAAGAGTAATGGT 154154 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| || || | || || || || |||||||| Sbjct 154153 CTTACCAGTGAGGGTCTTTACGAAGATTTGCAT 154121 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| || | ||| || ||||||||||| || || || | || |||| | | || Sbjct 154104 AGAACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCAGACAAGGTTCTGCCATCT 154045 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || | || || || ||| |||||||||| || ||||| || | ||||||||||| Sbjct 154044 TCTAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCT 153985 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| || || | | ||| ||||||| || ||| || | || |||||| Sbjct 153984 TGAATCTTGGTCTTGACATTGTCGATAGTATCAGAGGACTCAACCTCAAGAGTGATGGTC 153925 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAATCTCTTAT 21189 || || || | || || || || ||||||||| |||| | |||| Sbjct 153924 TTACCAGTGAGGGTCTTTACGAAGATTTGCATTGTGAAGTTGTTAT 153879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422259179414864