Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq3 118 9e-22 >seq3 Length=2773601 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | || || | || || || ||||| || || || || | Sbjct 153892 AATGCAAATCTTCGTAAAGACCCTCACTGGTAAGACCATCACTCTTGAGGTTGAGTCCTC 153951 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | || ||||| || ||| || || |||||| | || ||| || Sbjct 153952 TGATACTATCGACAATGTCAAGACCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCA 154011 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||||||||||| ||||| || || ||||| |||||| || ||| || | |||||||| Sbjct 154012 ACAAAGACTTATTTTTGCTGGTAAGCAATTAGAAGATGGCAGAACCTTGTCTGATTACAA 154071 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||||||||||||||||||||||||| |||| Sbjct 154072 TATTCAAAAGGAATCTACTCTTCACTTGGT 154101 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | || || | || || || |||||||| ||| || || | Sbjct 154121 ATGCAAATCTTCGTAAAGACCCTCACTGGTAAGACCATTACTCTTGAAGTTGAGTCCTCT 154180 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| |||||| || || |||||| | || ||| ||| Sbjct 154181 GATACTATTGATAATGTTAAGACCAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 154240 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||||||||| ||||| || || ||||| |||||| || ||| || | |||||||| Sbjct 154241 CAAAGACTTATTTTTGCTGGTAAGCAATTAGAAGATGGCAGAACCTTGTCTGATTACAAC 154300 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGT 25243 |||||||||||||| ||||| ||| |||| Sbjct 154301 ATTCAAAAGGAATCCACTCTCCACTTGGT 154329 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || |||| || ||||| || || ||||| ||| |||| || || | Sbjct 154349 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACCATCACCCTCGAAGTCGAGTCCTCT 154408 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| || || || || || ||| | || ||| ||| Sbjct 154409 GATACTATTGATAATGTTAAGACTAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAA 154468 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||||||||||||||| || || ||| | || ||| ||| | |||| ||||| Sbjct 154469 CAAAGACTTATCTTTGCTGGTAAGCAACTCGAGGATGGTCGTACTCTTTCCGACTACAAC 154528 Query 25215 ATTCAAAAGGAATCTACTCTTCAC 25238 |||||||||||||||||||||||| Sbjct 154529 ATTCAAAAGGAATCTACTCTTCAC 154552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410796779973656