Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq3 152 8e-32 >seq3 Length=2773601 Score = 152 bits (168), Expect = 8e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || ||||||| || || || || || || ||| | || |||| | | Sbjct 154121 ATGCAAATCTTCGTAAAGACCCTCACTGGTAAGACCATTACTCTTGAAGTTGAGTCCTCT 154180 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| |||| |||| || ||||||||||| || |||||||| || || || || Sbjct 154181 GATACTATTGATAATGTTAAGACC-AAAATTCAAGACAAGGAAGGTATTCCTCCAGACCA 154239 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| ||||||||||| || || |||||||| ||| | |||| || ||||| || Sbjct 154240 ACAAAGACTTATTTTTGCTGGTAAGCAATTAGAAGATGGCAGAACCTTGTCTGATTACAA 154299 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| ||||| ||| | || |||||| | ||| | || |||||||| Sbjct 154300 CATTCAAAAGGAATCCACTCTCCACTTGGTTCTTCGTCTTCGTGGTGGTAT 154350 Score = 150 bits (166), Expect = 3e-31 Identities = 183/248 (74%), Gaps = 1/248 (0%) Strand=Plus/Plus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 ||||||||||| || ||||||| || || || || || || ||| | ||| |||| | Sbjct 153890 ACAATGCAAATCTTCGTAAAGACCCTCACTGGTAAGACCATCACTCTTGAGGTTGAGTCC 153949 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 |||||| || ||| | || || |||||||| || |||||||| || || || Sbjct 153950 TCTGATACTATCGACAATGTCAAGACCAAGATTCAAGACAAGGAAGGTATTCCTCCAGAC 154009 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 |||||||| ||||||||||| || || |||||||| ||| | |||| || ||||| Sbjct 154010 CAACAAAGACTTATTTTTGCTGGTAAGCAATTAGAAGATGGCAGAACCTTGTCTGATTAC 154069 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAA 124774 ||||||||||| ||||| ||| | || |||||| | ||| | || |||||||| ||| Sbjct 154070 AATATTCAAAAGGAATCTACTCTTCACTTGGTTCTTCGTCTTCGTGGTGGTATGCAAATC 154129 Query 124775 TTCATAAA 124782 ||| |||| Sbjct 154130 TTCGTAAA 154137 Score = 93.3 bits (102), Expect = 6e-14 Identities = 305/471 (65%), Gaps = 11/471 (2%) Strand=Plus/Plus Query 205453 GCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACCCATA 205512 || ||||| | || || ||| |||| |||| ||||||||| || || || |||||| Sbjct 791537 GCGATCATCTTCGTTAACAAAGCATAAGAGGCAATATTAAATGGCACTCCCAAGCCCATA 791596 Query 205513 TCAGCTGATCTTTGATACATTTGACATGTAAGATAT---TTATTATTAA------TTACA 205563 ||| ||||||||| | ||||| | ||| | | ||| |||| ||||| Sbjct 791597 TCACAACTTCTTTGATATAACTGACAAGAAAGCTCTGGCTTACCATTACGGAAGCTTACA 791656 Query 205564 TGAAATTGTACAAAACAA-TGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATT 205622 | ||| || | |||| | ||||||||||| | | |||||| | | ||| ||||| Sbjct 791657 TAAAACTG-AGAAAATACGTGACAAGGTGGAAGAGCCATATCGTTCATATCGGCGGGATT 791715 Query 205623 CCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATATG 205682 ||| |||| | ||||| ||| | ||| | | || ||||| ||| | | Sbjct 791716 CCATGCTGACATGATTATTCGTCTGTCATATGGTGTCTCCTTGATTTTTCGTATCACTTC 791775 Query 205683 TGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACC 205742 || | |||||| | ||||| | | |||| ||||| ||| |||||| || || Sbjct 791776 TGCCAGTTGATCTACTCCTTTACCAGAGTAATCAGTATCGCAATCCTCATATTTGGCGCC 791835 Query 205743 AAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAA 205802 |||||| | |||||| |||||||| || || || | ||| || || ||| | | | Sbjct 791836 AAAATGTCTCCATTGGAAACCATACACGGGTCCAAGATCTCCCTCACGTCTGTGTTCTAG 791895 Query 205803 ACCACGtttttttatatattttaatgatccattttcatcccaaatatggattcctttatt 205862 || || || | | | | | | |||||| ||||||||||||| | ||| | | Sbjct 791896 TCCTCGCTTGTCCAAAAACTCTCGACTTCCATTGCCATCCCAAATATGAACGCCTCTGTC 791955 Query 205863 ttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTC 205913 || | || | || ||| || || | ||||||||||| |||||| Sbjct 791956 AGAAAGCAATTTCGAATCAGTAGACCCTTTGACAAACCATAATAGTTCTTC 792006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455962227200