Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq3 98.7 9e-16
seq2 89.7 4e-13
>seq3
Length=2773601
Score = 98.7 bits (108), Expect = 9e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|| ||||| | ||||| || |||||||||||||| ||| | ||| || |||||||
Sbjct 154557 ACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCGGAAAGAGTACGACCATCCTCG 154498
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
|| || || ||||| |||| || | || || || ||||| || ||||||||||||
Sbjct 154497 AGTTGCTTACCAGCAAAGATAAGTCTTTGTTGGTCTGGAGGAATACCCTCCTTGTCTTGG 154438
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || ||||| | || | || || | | |||||| |||| ||| | || ||
Sbjct 154437 ATCTTAGTCTTAACATTATCAATAGTATCAGAGGACTCGACTTCGAGGGTGATGGTCTTT 154378
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| |||| || || ||||| || |||||
Sbjct 154377 CCAGTCAAGGTCTTGACAAAGATTTGCAT 154349
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|| ||||||| || || || |||||||||||||| ||| | ||| || |||||||
Sbjct 154785 ACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAGAGAGTACGGCCATCCTCG 154726
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
|| || || |||||| | || | |||||| || || ||||| || |||||||||||| |
Sbjct 154725 AGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCCTCCTTGTCTTGA 154666
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | || | || || | | || || |||| || | || ||
Sbjct 154665 ATCTTGGTCTTGACGTTATCAATAGTATCAGAGGATTCAACTTCGAGAGTAATAGTCTTA 154606
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| |||| ||| || || || || |||||
Sbjct 154605 CCAGTCAAAGTCTTGACGAAGATTTGCAT 154577
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||||| || ||||| || || |||||||| ||| | ||| || || |||
Sbjct 155241 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCGTCTTCG 155182
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || || || ||||||| | || || || || || |||||||||||||||
Sbjct 155181 AGCTGCTTACCGGCAAAGATGAGTCTTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGG 155122
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | || | |||||||| ||||||||||| || | || ||
Sbjct 155121 ATCTTGGTCTTGACATTATCAATGGTGTCCGAAGACTCGACCTCGAGCGTGATAGTCTTA 155062
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || || || || || || || |||||
Sbjct 155061 CCAGTGAGGGTCTTGACGAAGATTTGCAT 155033
Score = 87.8 bits (96), Expect = 2e-12
Identities = 137/196 (70%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594
||||| || ||||| |||||||||||||| || | || | ||||||||| ||
Sbjct 1977675 GTGGAGAGTCGACTCCTTTTGAATGTTGTAGTCAGAAAGGGTTCTGCCATCCTCGAGTTG 1977616
Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654
|| || ||| |||| ||||| || ||||| || || || |||||||||||| || ||
Sbjct 1977615 CTTACCGGCGAAGATAAGACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTT 1977556
Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
|| || | || | |||||| | ||||||||||| ||| | || || || ||
Sbjct 1977555 GGTCTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTACCAGT 1977496
Query 118715 CAGAGTTTTTACAAAA 118730
|| || || || |||
Sbjct 1977495 AAGGGTCTTGACGAAA 1977480
>seq2
Length=4956242
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594
||||| |||||||| ||||| |||||||| || | || || |||||| || ||
Sbjct 2345923 GTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCCTCAAGTTG 2345982
Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654
|| ||||| |||| | ||| || ||||| || || || |||||||||||| || ||
Sbjct 2345983 CTTACCAGCAAAGATCAAACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTT 2346042
Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
|| || | |||| ||||| | ||| ||||| | ||| | || || |||||
Sbjct 2346043 GGTCTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCAAGGGTGATAGTCTTACCGGT 2346102
Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738
|| || || || ||||| |||||
Sbjct 2346103 AAGGGTCTTGACGAAAATTTGCAT 2346126
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433830378850768
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