Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 1e-14 >seq3 Length=2773601 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | ||||| || |||| || ||||||||||| || || Sbjct 155224 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCGTCTTCGAGCTGCTTACCGGCAAA 155165 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||||| || ||||| | || | || ||||||||| ||| || |||| | Sbjct 155164 GATGAGTCTTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGTCTTGACATT 155105 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| || || || |||| |||||| || || || || || ||||| || Sbjct 155104 ATCAATGGTGTCCGAAGACTCGACCTCGAGCGTGATAGTCTTACCAGTGAGGGTCTTGAC 155045 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 155044 GAAGATTTGCAT 155033 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||||||||||||||||| || || | | || |||| ||||||||||| || Sbjct 154083 TCCTTTTGAATATTGTAATCAGACAAGGTTCTGCCATCTTCTAATTGCTTACCAGCAAAA 154024 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 43111 || |||| || ||||| | || | | ||||||| | ||| | || || |||| | Sbjct 154023 ATAAGTCTTTGTTGGTCTGGAGGAATACCTTCCTTGT-CTTGAATCTTGGTCTTGACATT 153965 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | || || || || || || | |||||||| || || || || |||||||| Sbjct 153964 GTCGATAGTATCAGAGGACTCAACCTCAAGAGTGATGGTCTTACCAGTGAGGGTCTTTAC 153905 Query 43172 AAAGATTTGCATT 43184 |||||||||||| Sbjct 153904 GAAGATTTGCATT 153892 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||||||||| ||||| || | ||||| || | || || || |||||||||||||| Sbjct 154767 TCCTTTTGAATGTTGTAGTCGGAGAGAGTACGGCCATCCTCGAGTTGCTTACCAGCGAAA 154708 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 43111 || | ||||| ||||| | || | | |||||||| | ||| | || || |||| | Sbjct 154707 ATCAAACGCTGTTGGTCTGGAGGAATACCCTCCTTGT-CTTGAATCTTGGTCTTGACGTT 154649 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | || || ||||| || |||| || || || || || || | ||||| || Sbjct 154648 ATCAATAGTATCAGAGGATTCAACTTCGAGAGTAATAGTCTTACCAGTCAAAGTCTTGAC 154589 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 154588 GAAGATTTGCAT 154577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817571409120