Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq3 107 3e-18
>seq3
Length=2773601
Score = 107 bits (118), Expect = 3e-18
Identities = 108/138 (78%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| | ||| | | ||||| || | ||||||||| ||| || ||||| ||||| ||
Sbjct 154119 CCACCACGAAGACGAAGAACCAAGTGAAGAGTAGATTCCTTTTGA-ATATTGTAATCAGA 154061
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
| ||||||| ||| |||||||| || ||||||||||| | |||||| || || |||||
Sbjct 154060 CAAGGTTCTGCCATCTTCTAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGG 154001
Query 146170 AATTCCTTCTTTATCTTG 146187
||| ||||| || |||||
Sbjct 154000 AATACCTTCCTTGTCTTG 153983
Score = 98.7 bits (108), Expect = 1e-15
Identities = 106/138 (77%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| | ||| | | ||||| || | ||| ||||| ||| || || || ||||| ||
Sbjct 154347 CCACCACGAAGACGAAGAACCAAGTGGAGAGTGGATTCCTTTTGA-ATGTTGTAATCAGA 154289
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
| ||||||| ||| |||||||| || ||||||||||| | |||||| || || |||||
Sbjct 154288 CAAGGTTCTGCCATCTTCTAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGG 154229
Query 146170 AATTCCTTCTTTATCTTG 146187
||| ||||| || |||||
Sbjct 154228 AATACCTTCCTTGTCTTG 154211
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743526362823680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |