Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq2 205 9e-48
>seq2
Length=4956242
Score = 205 bits (226), Expect = 9e-48
Identities = 577/879 (66%), Gaps = 9/879 (1%)
Strand=Plus/Minus
Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003
|||||||| ||| |||||||| |||||||| || || || || ||||| || |||
Sbjct 3220310 TTTTGATAGTCAGACACTCTCTTCTCAAAGAAGTTGGTCTTGCCAGACAATGAGATGTTT 3220251
Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAAC-AA 16062
||||| |||||||| || || | | | ||| ||| | | |||| || ||
Sbjct 3220250 TCCATGAAATCAAAGGGGTTGGTAGCATTATATACCTTACTGT-TACCAAGGGAAAGTAA 3220192
Query 16063 TAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAA 16122
|||||| || || ||||| || || || || ||| | | |||||||| | |
Sbjct 3220191 TAATCTGTCAGCAACAAACTCAATGTATTGGCACATAAGCTTGGCATTCATTCCCAAAAG 3220132
Query 16123 TTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTAT 16182
|| || | || || || || || | ||||| ||| |||| |||||| |||| ||
Sbjct 3220131 ACTACATGGCAAAGCATCAGTCAAGAACTCCTTTTCAATAATAACGGCTTCAGTGATAAT 3220072
Query 16183 ATCTCTTACTACA--CTATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCA 16240
| | | ||| || ||| || ||| | | ||| || | | |||||||
Sbjct 3220071 CTTTTCAATAACAGACTTCTTA--GGTCTGTTGACAAGGTGGCCGAAAAGCAAACAAGCA 3220014
Query 16241 AAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGC 16300
||||| |||| ||||| || | || || |||||||| || || ||||| |||
Sbjct 3220013 AAATCGGTGTGCATGCCTTCATCACGCGAGATCAATTCGTTTGAGAACGTCAGACCAGGC 3219954
Query 16301 ATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCT 16360
|| ||||| || || || | ||| || ||| ||||||||| ||||| ||||| |||||
Sbjct 3219953 ATGAGTCCACGCTTCTTCAACCAGAAGATACTGGCAAATGATCCAGAGAAGAAGATACCC 3219894
Query 16361 TCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccat 16420
||||| || ||||| ||||| | |||||| | | || | | | | ||||||
Sbjct 3219893 TCAACGGCAGCAAAGGCAACGAGACGCTCAGCAAAAGTGGACTGATCATCAGCAATCCAT 3219834
Query 16421 tttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAA 16480
|||||| | || || | |||| ||| || || || || |||| || |||
Sbjct 3219833 CGGAGAGCCCAGTCAGCCTTCTTCTTAATACATGGAATATTGTCAATAGCATGGAACAAA 3219774
Query 16481 TAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAA 16540
| || || || ||| |||||||| || || ||||| || | |||| |
Sbjct 3219773 AAGTTAGCCTCCTTAGCATCCTTGATATAAGTGTCAATAAGTAATGAGTAGGTCTCTGCA 3219714
Query 16541 TGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACT 16600
|| || |||||||| || || ||||| ||||| || | || |||| ||||| |||
Sbjct 3219713 TGGATGTTCTCCATCATAATTTGGAAACCGTAAAAACACTTTGCCTCGGGAATTTGAACT 3219654
Query 16601 TCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAAC 16660
||| | || ||||| | ||||| ||||| || || ||||| ||| ||||| ||
Sbjct 3219653 TCACCAGAGAATCTTTCAACCAAGTTCTCGTTGACGATACCATCTGAAGCAGCAAAGAAT 3219594
Query 16661 GCAAGTATGTGTTTAATAAAAtttttttCGTTATC-TGA--AAGTTTTAACCAGTCAGAA 16717
||||| | | |||||| | | || | ||| | | | | | |||||||
Sbjct 3219593 GCAAGGACACGAGAGATAAAAAATCTCTCATCATCATTAAGACGGTGCTCCCAGTCACTG 3219534
Query 16718 AAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATAC 16777
| || ||| |||||| | ||||| ||||||| |||||||| |||||| || |||
Sbjct 3219533 ATGTCCTTTCCTAAATCAATTTCTTCAGCAGTCCAGAAAGAAGCCTCAGCCTGCTTGTAC 3219474
Query 16778 ATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACA 16816
|||| ||| || || | ||| |||||| |||| ||||
Sbjct 3219473 ATTTGCCAAATCTCATGGTACTTAATAGGGAACAGAACA 3219435
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462511976874400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |