Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2 205 9e-48 >seq2 Length=4956242 Score = 205 bits (226), Expect = 9e-48 Identities = 577/879 (66%), Gaps = 9/879 (1%) Strand=Plus/Minus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 |||||||| ||| |||||||| |||||||| || || || || ||||| || ||| Sbjct 3220310 TTTTGATAGTCAGACACTCTCTTCTCAAAGAAGTTGGTCTTGCCAGACAATGAGATGTTT 3220251 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAAC-AA 16062 ||||| |||||||| || || | | | ||| ||| | | |||| || || Sbjct 3220250 TCCATGAAATCAAAGGGGTTGGTAGCATTATATACCTTACTGT-TACCAAGGGAAAGTAA 3220192 Query 16063 TAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAA 16122 |||||| || || ||||| || || || || ||| | | |||||||| | | Sbjct 3220191 TAATCTGTCAGCAACAAACTCAATGTATTGGCACATAAGCTTGGCATTCATTCCCAAAAG 3220132 Query 16123 TTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTAT 16182 || || | || || || || || | ||||| ||| |||| |||||| |||| || Sbjct 3220131 ACTACATGGCAAAGCATCAGTCAAGAACTCCTTTTCAATAATAACGGCTTCAGTGATAAT 3220072 Query 16183 ATCTCTTACTACA--CTATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCA 16240 | | | ||| || ||| || ||| | | ||| || | | ||||||| Sbjct 3220071 CTTTTCAATAACAGACTTCTTA--GGTCTGTTGACAAGGTGGCCGAAAAGCAAACAAGCA 3220014 Query 16241 AAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGC 16300 ||||| |||| ||||| || | || || |||||||| || || ||||| ||| Sbjct 3220013 AAATCGGTGTGCATGCCTTCATCACGCGAGATCAATTCGTTTGAGAACGTCAGACCAGGC 3219954 Query 16301 ATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCT 16360 || ||||| || || || | ||| || ||| ||||||||| ||||| ||||| ||||| Sbjct 3219953 ATGAGTCCACGCTTCTTCAACCAGAAGATACTGGCAAATGATCCAGAGAAGAAGATACCC 3219894 Query 16361 TCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccat 16420 ||||| || ||||| ||||| | |||||| | | || | | | | |||||| Sbjct 3219893 TCAACGGCAGCAAAGGCAACGAGACGCTCAGCAAAAGTGGACTGATCATCAGCAATCCAT 3219834 Query 16421 tttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAA 16480 |||||| | || || | |||| ||| || || || || |||| || ||| Sbjct 3219833 CGGAGAGCCCAGTCAGCCTTCTTCTTAATACATGGAATATTGTCAATAGCATGGAACAAA 3219774 Query 16481 TAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAA 16540 | || || || ||| |||||||| || || ||||| || | |||| | Sbjct 3219773 AAGTTAGCCTCCTTAGCATCCTTGATATAAGTGTCAATAAGTAATGAGTAGGTCTCTGCA 3219714 Query 16541 TGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACT 16600 || || |||||||| || || ||||| ||||| || | || |||| ||||| ||| Sbjct 3219713 TGGATGTTCTCCATCATAATTTGGAAACCGTAAAAACACTTTGCCTCGGGAATTTGAACT 3219654 Query 16601 TCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAAC 16660 ||| | || ||||| | ||||| ||||| || || ||||| ||| ||||| || Sbjct 3219653 TCACCAGAGAATCTTTCAACCAAGTTCTCGTTGACGATACCATCTGAAGCAGCAAAGAAT 3219594 Query 16661 GCAAGTATGTGTTTAATAAAAtttttttCGTTATC-TGA--AAGTTTTAACCAGTCAGAA 16717 ||||| | | |||||| | | || | ||| | | | | | ||||||| Sbjct 3219593 GCAAGGACACGAGAGATAAAAAATCTCTCATCATCATTAAGACGGTGCTCCCAGTCACTG 3219534 Query 16718 AAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATAC 16777 | || ||| |||||| | ||||| ||||||| |||||||| |||||| || ||| Sbjct 3219533 ATGTCCTTTCCTAAATCAATTTCTTCAGCAGTCCAGAAAGAAGCCTCAGCCTGCTTGTAC 3219474 Query 16778 ATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACA 16816 |||| ||| || || | ||| |||||| |||| |||| Sbjct 3219473 ATTTGCCAAATCTCATGGTACTTAATAGGGAACAGAACA 3219435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511976874400