Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq1 221 1e-52
seq2 163 3e-35
seq3 107 2e-18
>seq1
Length=5930846
Score = 221 bits (244), Expect = 1e-52
Identities = 626/942 (66%), Gaps = 25/942 (3%)
Strand=Plus/Plus
Query 23008 AAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTA 23067
||||||| | ||| | | || || || || || || || ||| | |||||||| |||
Sbjct 4966706 AAACTTGGTAACG-CTACGGATGCCAGGTTACACACAGCGGTCTCCTGTTTGGACGAGTA 4966764
Query 23068 CTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCT 23127
|| | ||| || || ||||||||| | | || ||||| || | ||| | || ||
Sbjct 4966765 CTGGATAATCTCCGTGCATAGATTGGAAGATTTAATCGTACCAAGATTATTTTGATTTGA 4966824
Query 23128 TTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTC 23187
||||| || || ||||| ||||| |||||| | || || || |||||||| || | |||
Sbjct 4966825 TTTTCTGTTACAGGAATCTTTGTAAAGCATGAATGGAGTTCCAGTCTCGACTTGAGTCTC 4966884
Query 23188 GATGATCGCTCGCCACATAGTCTGAGCG-TGAACACGTCGCACGTACCTGCCTTCTTCCT 23246
| || || ||| | |||| || ||| | | || || | ||| ||||| |
Sbjct 4966885 TAAAATGGCAAACCAGAGCTTCTGGGCTCTGACCTTG-CGAACATGTCTGTTTTCTTTTT 4966943
Query 23247 CGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATT 23306
| || ||| |||||| | || ||||| ||||||| ||| | | || || | ||
Sbjct 4966944 CATATCTTTTGTACAAAGTTTCGAATTCATCACCGTAGACGTCAGATAAACCAGGAGCTT 4967003
Query 23307 GCATC-GGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCC 23365
|||| || | | | | ||| | || || || | |||| || | |||
Sbjct 4967004 -CATCAGGTGAAAATAAGCACCATTCTTGGTTGTTGCTTACCTTTTTCATGAACAAATCA 4967062
Query 23366 GGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTT 23425
|| ||||| ||||| || |||| || || || | | || ||||||||| || | |||
Sbjct 4967063 GGGATCCAAAGAGCATAAAACAAGTCTCGAGCTCTTAATTCTTCTTTGCCG-TGAT-TTT 4967120
Query 23426 TTC--AAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACG 23483
||| || || ||||| || || | || ||||| || || | ||||| ||||| |
Sbjct 4967121 TTCGTAACTCTAAAAACTCTAATATATCACTGTGCCAAGGTTCCAAGTAAATAGCAAAAG 4967180
Query 23484 CGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTA 23543
| || ||||| || || || |||||||| || || | ||| || ||||| | |||||||
Sbjct 4967181 CACCTGGTCTTTTGTTACCACCCTGATCTACATACCTGGCAGTATTGTTAAAAACTCTTA 4967240
Query 23544 GCATCGGCACGAGACCGTTGGACGCGCCGCC--TACGCCC-GCCACACTCGAACCTTTTG 23600
|||||||||| | || ||||| || ||| ||| ||| || | | ||| | |
Sbjct 4967241 GCATCGGCACAATTCCATTGGA---GCTGCCATTACTCCCAGCAATGTAAGCACCCGTCG 4967297
Query 23601 CTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATT 23660
|| | || |||| ||||| ||| || || || | | ||| || ||||| ||||| |
Sbjct 4967298 ACCGGATATTATGAATGTGGAGACCAATCCCACCTGCAGTTTTTGAGATCATAGCGCAGT 4967357
Query 23661 GTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACG 23720
||| || || ||||| ||||| || ||| |||||||| | || |||||||| || |
Sbjct 4967358 CTTTTAGGGTATCGTAAATGCCTTCTATGGAATCCTCTTTCATAGCTACCAAGAAGCAGG 4967417
Query 23721 AAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGT 23780
| || | ||| | || ||||| | | ||| ||||| || || || || || |
Sbjct 4967418 ACGATAATTGAGGATTAGGCGTGCCAGAGTTGAATAGTGTTGGTGACGCATGGGTGAAAT 4967477
Query 23781 ATCCATTCGACATTAGATTG-TACGTGTCGATGGCGGCATCAATGTCCTCT-CCGTGTAT 23838
|| | |||||||| |||| || || |||||| | ||| || | |||| || || ||
Sbjct 4967478 ATTTTTCCGACATTA-ATTGATATGTCTCGATGACCCTATCTATAT-CTCTGCCATGAAT 4967535
Query 23839 ACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGAC---GCCGTTAAT 23895
||| | || || | ||| | ||| | ||| || || || | | || ||| | ||
Sbjct 4967536 ACCCACCGCCACTCTCATTAACATCTGTTGCGGCCTTTCAA---TAACTCTGCCATACAT 4967592
Query 23896 TTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATA 23937
||| | ||| || || | || | ||| || ||||| |||||
Sbjct 4967593 TTTAAGCAGGTACGATCTTTCGAGCGTCTTTAATCCGAAATA 4967634
>seq2
Length=4956242
Score = 163 bits (180), Expect = 3e-35
Identities = 611/953 (64%), Gaps = 4/953 (0%)
Strand=Plus/Minus
Query 23026 CGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACA 23085
||| || | ||| || ||||| || || || || | |||||| |||||||| ||
Sbjct 3633513 CGATGCCAAATTACAGACGGCAACTTCTTCAGGAGAAGAGTACTCAACAATTTCACAGCA 3633454
Query 23086 TAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATC 23145
| ||| |||| || || ||||| || ||||| || || | ||| || | |||
Sbjct 3633453 CAAGTTGGAGGACTTGATAGTACCCAAGTTTTGTTGGTTACTCTTGCTATTACAAGCATC 3633394
Query 23146 CTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACAT 23205
||| || |||||| | || | || ||||| || | |||| || || |||||
Sbjct 3633393 CTTATAAAGCATGAATGGGTTACCAGTCTCAGTTTGAGCTTCGAGAATAGCATACCACAG 3633334
Query 23206 AGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACGC 23265
| || || | | || | || ||||| | ||||||||| | || | ||
Sbjct 3633333 CTTTTGGGCCTTGATGGTTCTTCTGCCTCTACCTTCCTTCTCGTACTTCTCATAAAGAGC 3633274
Query 23266 GTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGAC 23324
| || ||| |||| || ||| || ||| ||| || | | | |||||||| | |
Sbjct 3633273 AACGAACTCGTCACCATAGACA-TCATCCAAGCCAGGACACTCATTGGGACACATCAAAG 3633215
Query 23325 TCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGA 23384
|||| || | | || | |||| || | || || ||||||||||| |||
Sbjct 3633214 TCCAATCCTCGTTAGCCTTGACTCTCTTCATGAACAAGTCAGGAATCCATAGAGCCAAGA 3633155
Query 23385 ACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCA 23444
||| || | ||| || || || || || ||| |||||| || || | || || |
Sbjct 3633154 ACAAATCTCTGGCACGGACTTCTTCCTTACCGTGATTCTTTCGCAGCTCAATGAATTCAA 3633095
Query 23445 ACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGC 23504
| || || ||||||| ||||| | ||| | |||||| || || |||| |||||| || |
Sbjct 3633094 AAACATCATCATGCCAAGGCTCCAAGTACATGGCAAAAGCACCTGGTCGCTTATTACCAC 3633035
Query 23505 CCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGG 23564
||||||| || || | || || || ||| | ||||| | ||| || || | |||||| |
Sbjct 3633034 CCTGATCAACATATCTAGCAGTATTATTGAAAACTCTCAACATGGGAACAATACCGTTTG 3632975
Query 23565 ACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAAC 23624
| | ||| || || | || || | || || | || ||||| ||||
Sbjct 3632974 AGGTACCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCACGGATATTATGAACACTCAAAC 3632915
Query 23625 CTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCT 23684
| || || || | || || || |||| || || |||| ||| ||||| ||||| |
Sbjct 3632914 CAATACCACCAGCAGACTTTGAAATCAAGGCACAAGTCTTCAAAGTATCGTAAATGCCAT 3632855
Query 23685 CGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAG 23744
| || || || || | |||||||| || || |||||||| | ||||| |||
Sbjct 3632854 CTATAGAATCGTCCTTCATGTTAACCAAGAAGCAAGAGGACATTTGAGGCTTGGGAGTAC 3632795
Query 23745 CGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT-TAGATTGTAC 23803
| || | |||| || ||| ||| || ||||| || | ||||| ||| |||||
Sbjct 3632794 CAGCATTGTACAGAGTGGGGGAGGCATGTGTAAAATACTTTTGAGACATGTAG-TTGTAT 3632736
Query 23804 GTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATG 23863
|| || ||||| || || || || ||||| | || || | ||| ||||||
Sbjct 3632735 GTTTCAATGGCCTTGGTGATATCAGAACCATGAATACCAACAGCTACTCTCATGATCATG 3632676
Query 23864 TATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTT 23923
| ||| ||||||||| | | || ||||| |||| || || || | || || ||
Sbjct 3632675 TGTTGGGGTCTCTCGGCGATTTTACCATTAATCTTGAGCAAGTACGATCTTTCCAAAGTC 3632616
Query 23924 TTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976
|| || || || || | || || |||||||| | || ||||| |||||
Sbjct 3632615 TTGAAACCGAAGTAATTGTAAGAGAAATCACGATCATAAACAATGGCTGAATT 3632563
Score = 120 bits (132), Expect = 3e-22
Identities = 344/523 (66%), Gaps = 7/523 (1%)
Strand=Plus/Minus
Query 22154 TAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTT 22213
|| ||||| || ||||| |||||| | | ||| |||| ||||| || ||||||||
Sbjct 3634391 TAGTACATTCCTGTCTTAAGACCCTTTTGCCAGCCGTAGAAATGCATACTAGTCAATTTG 3634332
Query 22214 CCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCT 22273
|| | | || | ||||| | || || || ||||| ||||||||||| || |
Sbjct 3634331 CCCATAGTAGGAGCTTGAATGTAAATGTTCAAAGATTGACTTTGATCGATAAAGGCAGCA 3634272
Query 22274 CGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGT 22333
||||| || ||||||| || | ||| | || | ||||| || ||||| |||| |
Sbjct 3634271 CGATCAGCAGCCATATCAATGATTGTCTTCTGAGAAAGCTCCCAAACAGTCTTATACAAT 3634212
Query 22334 TGCCTGATCTCTAACGGTATCGATTCGA-TCCTCTGGACGGACCCGTTATTGTGTATGAT 22392
| |||| || || || | | || | |||| | || || || ||| || ||
Sbjct 3634211 GCCTTGATATCCTCAGGGAT-GTTAGGAATATTCTGAATAGAACCATTGTTGGCAATAAT 3634153
Query 22393 CAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACG 22452
||| || || | || ||||| || | || | || || | || |
Sbjct 3634152 TCTATTCTTCATGTTCTCTCCCCACAGTCCCAAATCGACAAGGTCCTTCAACAACCATTG 3634093
Query 22453 GTTCACCACTTGAAACTCGCCGGACAAGA-CGCGGCGTTGGTAAATGTTGGATGTGAACG 22511
|| || | ||| || || |||| ||||| | | || ||| |||||||||||| | |
Sbjct 3634092 ATTAACAATTTGGAATTCACCGG-CAAGAACTCTACGAGAGTAGATGTTGGATGTGTAAG 3634034
Query 22512 GTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCA 22571
|||||||| |||| ||||| || || || || | || || || || ||||| || || |
Sbjct 3634033 GTTCGAAACATTCGTTGTTACCAAGAATTTGTGATGTTGAGGCAGTAGGCATAGGAGCAA 3633974
Query 22572 ACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCC 22631
|| || |||||||||| || ||||| | || || ||||||| | ||||||||
Sbjct 3633973 CGAGAAGGGAGTTTCTCAGACCATGCTTAGCCATCTTCTTCTTGAGAGCAGCCCAGTCCC 3633914
Query 22632 ACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAA 22674
| ||||| | || || | | ||||||| ||| |||||||
Sbjct 3633913 AGAGATCAGTGGGAGTGA---TATCCCACAAATCAAATTGCAA 3633874
>seq3
Length=2773601
Score = 107 bits (118), Expect = 2e-18
Identities = 153/213 (72%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| |||||| |||| || || || || || |||| || || | ||
Sbjct 154805 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACTATTACTCTCGAAGTCGAGTCCTCT 154864
Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|| | | |||| | ||||| || ||| | | |||||||||| | || || |||||
Sbjct 154865 GATACTATCGACAACGTCAAGACTAAGATTCAAG-ACAAGGAAGGTATTCCTCCAGACCA 154923
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||||| | || |||||||| || || ||||||||| ||| | ||| |||||
Sbjct 154924 ACAGCGTTTGATTTTCGCTGGTAAGCAATTGGAAGACGGCCGTACTCTCTCCGACTATAA 154983
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| ||||| ||||| ||||| || |||| ||
Sbjct 154984 CATCCAAAAGGAATCTACTCTCCACTTGGTCCT 155016
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||||||||| || || || || || ||||| | || ||||| | ||
Sbjct 153893 ATGCAAATCTTCGTAAAGACCCTCACTGGTAAGACCATCACTCTTGAGGTTGAGTCCTCT 153952
Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|| | | |||| | ||||| || || || ||||||||||| | || || |||||
Sbjct 153953 GATACTATCGACAATGTCAAGACCAAG-ATTCAAGACAAGGAAGGTATTCCTCCAGACCA 154011
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|| | || || || ||||| || || || ||||| | || || ||||| ||
Sbjct 154012 ACAAAGACTTATTTTTGCTGGTAAGCAATTAGAAGATGGCAGAACCTTGTCTGATTACAA 154071
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|||||||| ||||| |||||||| |||| ||| | || | || ||||
Sbjct 154072 TATTCAAAAGGAATCTACTCTTCACTTGGTTCTTCGTCTTCGTGGTGGTA 154121
Score = 86.0 bits (94), Expect = 6e-12
Identities = 143/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| |||||| |||| || || || || || |||| |||||| | ||
Sbjct 154577 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACTATTACTCTCGAAGTTGAATCCTCT 154636
Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|| | | | || | ||||| || ||| | | ||||||| || | || || |||||
Sbjct 154637 GATACTATTGATAACGTCAAGACCAAGATTCAAG-ACAAGGAGGGTATTCCTCCAGACCA 154695
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||||| | || |||||||| || || | || || ||| | ||| || ||
Sbjct 154696 ACAGCGTTTGATTTTCGCTGGTAAGCAACTCGAGGATGGCCGTACTCTCTCCGACTACAA 154755
Query 31372 CATTCAAAAAGAATCGACTCTTCA 31395
||||||||| ||||| ||||| ||
Sbjct 154756 CATTCAAAAGGAATCCACTCTCCA 154779
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||||||||| || || || || || || || | || ||||| | ||
Sbjct 154121 ATGCAAATCTTCGTAAAGACCCTCACTGGTAAGACCATTACTCTTGAAGTTGAGTCCTCT 154180
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | | || | || || | ||| ||||||||||| | || || |||||
Sbjct 154181 GATACTATTGATAATGTTAAGACCAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 154240
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| | || || || ||||| || || || ||||| | || || ||||| |||
Sbjct 154241 CAAAGACTTATTTTTGCTGGTAAGCAATTAGAAGATGGCAGAACCTTGTCTGATTACAAC 154300
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|||||||| ||||| ||||| || |||| ||| | || | || ||||
Sbjct 154301 ATTCAAAAGGAATCCACTCTCCACTTGGTTCTTCGTCTTCGTGGTGGTA 154349
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445766377711680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |