Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1 221 1e-52 seq2 163 3e-35 seq3 107 2e-18 >seq1 Length=5930846 Score = 221 bits (244), Expect = 1e-52 Identities = 626/942 (66%), Gaps = 25/942 (3%) Strand=Plus/Plus Query 23008 AAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTA 23067 ||||||| | ||| | | || || || || || || || ||| | |||||||| ||| Sbjct 4966706 AAACTTGGTAACG-CTACGGATGCCAGGTTACACACAGCGGTCTCCTGTTTGGACGAGTA 4966764 Query 23068 CTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCT 23127 || | ||| || || ||||||||| | | || ||||| || | ||| | || || Sbjct 4966765 CTGGATAATCTCCGTGCATAGATTGGAAGATTTAATCGTACCAAGATTATTTTGATTTGA 4966824 Query 23128 TTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTC 23187 ||||| || || ||||| ||||| |||||| | || || || |||||||| || | ||| Sbjct 4966825 TTTTCTGTTACAGGAATCTTTGTAAAGCATGAATGGAGTTCCAGTCTCGACTTGAGTCTC 4966884 Query 23188 GATGATCGCTCGCCACATAGTCTGAGCG-TGAACACGTCGCACGTACCTGCCTTCTTCCT 23246 | || || ||| | |||| || ||| | | || || | ||| ||||| | Sbjct 4966885 TAAAATGGCAAACCAGAGCTTCTGGGCTCTGACCTTG-CGAACATGTCTGTTTTCTTTTT 4966943 Query 23247 CGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATT 23306 | || ||| |||||| | || ||||| ||||||| ||| | | || || | || Sbjct 4966944 CATATCTTTTGTACAAAGTTTCGAATTCATCACCGTAGACGTCAGATAAACCAGGAGCTT 4967003 Query 23307 GCATC-GGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCC 23365 |||| || | | | | ||| | || || || | |||| || | ||| Sbjct 4967004 -CATCAGGTGAAAATAAGCACCATTCTTGGTTGTTGCTTACCTTTTTCATGAACAAATCA 4967062 Query 23366 GGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTT 23425 || ||||| ||||| || |||| || || || | | || ||||||||| || | ||| Sbjct 4967063 GGGATCCAAAGAGCATAAAACAAGTCTCGAGCTCTTAATTCTTCTTTGCCG-TGAT-TTT 4967120 Query 23426 TTC--AAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACG 23483 ||| || || ||||| || || | || ||||| || || | ||||| ||||| | Sbjct 4967121 TTCGTAACTCTAAAAACTCTAATATATCACTGTGCCAAGGTTCCAAGTAAATAGCAAAAG 4967180 Query 23484 CGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTA 23543 | || ||||| || || || |||||||| || || | ||| || ||||| | ||||||| Sbjct 4967181 CACCTGGTCTTTTGTTACCACCCTGATCTACATACCTGGCAGTATTGTTAAAAACTCTTA 4967240 Query 23544 GCATCGGCACGAGACCGTTGGACGCGCCGCC--TACGCCC-GCCACACTCGAACCTTTTG 23600 |||||||||| | || ||||| || ||| ||| ||| || | | ||| | | Sbjct 4967241 GCATCGGCACAATTCCATTGGA---GCTGCCATTACTCCCAGCAATGTAAGCACCCGTCG 4967297 Query 23601 CTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATT 23660 || | || |||| ||||| ||| || || || | | ||| || ||||| ||||| | Sbjct 4967298 ACCGGATATTATGAATGTGGAGACCAATCCCACCTGCAGTTTTTGAGATCATAGCGCAGT 4967357 Query 23661 GTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACG 23720 ||| || || ||||| ||||| || ||| |||||||| | || |||||||| || | Sbjct 4967358 CTTTTAGGGTATCGTAAATGCCTTCTATGGAATCCTCTTTCATAGCTACCAAGAAGCAGG 4967417 Query 23721 AAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGT 23780 | || | ||| | || ||||| | | ||| ||||| || || || || || | Sbjct 4967418 ACGATAATTGAGGATTAGGCGTGCCAGAGTTGAATAGTGTTGGTGACGCATGGGTGAAAT 4967477 Query 23781 ATCCATTCGACATTAGATTG-TACGTGTCGATGGCGGCATCAATGTCCTCT-CCGTGTAT 23838 || | |||||||| |||| || || |||||| | ||| || | |||| || || || Sbjct 4967478 ATTTTTCCGACATTA-ATTGATATGTCTCGATGACCCTATCTATAT-CTCTGCCATGAAT 4967535 Query 23839 ACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGAC---GCCGTTAAT 23895 ||| | || || | ||| | ||| | ||| || || || | | || ||| | || Sbjct 4967536 ACCCACCGCCACTCTCATTAACATCTGTTGCGGCCTTTCAA---TAACTCTGCCATACAT 4967592 Query 23896 TTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATA 23937 ||| | ||| || || | || | ||| || ||||| ||||| Sbjct 4967593 TTTAAGCAGGTACGATCTTTCGAGCGTCTTTAATCCGAAATA 4967634 >seq2 Length=4956242 Score = 163 bits (180), Expect = 3e-35 Identities = 611/953 (64%), Gaps = 4/953 (0%) Strand=Plus/Minus Query 23026 CGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACA 23085 ||| || | ||| || ||||| || || || || | |||||| |||||||| || Sbjct 3633513 CGATGCCAAATTACAGACGGCAACTTCTTCAGGAGAAGAGTACTCAACAATTTCACAGCA 3633454 Query 23086 TAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATC 23145 | ||| |||| || || ||||| || ||||| || || | ||| || | ||| Sbjct 3633453 CAAGTTGGAGGACTTGATAGTACCCAAGTTTTGTTGGTTACTCTTGCTATTACAAGCATC 3633394 Query 23146 CTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACAT 23205 ||| || |||||| | || | || ||||| || | |||| || || ||||| Sbjct 3633393 CTTATAAAGCATGAATGGGTTACCAGTCTCAGTTTGAGCTTCGAGAATAGCATACCACAG 3633334 Query 23206 AGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACGC 23265 | || || | | || | || ||||| | ||||||||| | || | || Sbjct 3633333 CTTTTGGGCCTTGATGGTTCTTCTGCCTCTACCTTCCTTCTCGTACTTCTCATAAAGAGC 3633274 Query 23266 GTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGAC 23324 | || ||| |||| || ||| || ||| ||| || | | | |||||||| | | Sbjct 3633273 AACGAACTCGTCACCATAGACA-TCATCCAAGCCAGGACACTCATTGGGACACATCAAAG 3633215 Query 23325 TCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGA 23384 |||| || | | || | |||| || | || || ||||||||||| ||| Sbjct 3633214 TCCAATCCTCGTTAGCCTTGACTCTCTTCATGAACAAGTCAGGAATCCATAGAGCCAAGA 3633155 Query 23385 ACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCA 23444 ||| || | ||| || || || || || ||| |||||| || || | || || | Sbjct 3633154 ACAAATCTCTGGCACGGACTTCTTCCTTACCGTGATTCTTTCGCAGCTCAATGAATTCAA 3633095 Query 23445 ACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGC 23504 | || || ||||||| ||||| | ||| | |||||| || || |||| |||||| || | Sbjct 3633094 AAACATCATCATGCCAAGGCTCCAAGTACATGGCAAAAGCACCTGGTCGCTTATTACCAC 3633035 Query 23505 CCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGG 23564 ||||||| || || | || || || ||| | ||||| | ||| || || | |||||| | Sbjct 3633034 CCTGATCAACATATCTAGCAGTATTATTGAAAACTCTCAACATGGGAACAATACCGTTTG 3632975 Query 23565 ACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAAC 23624 | | ||| || || | || || | || || | || ||||| |||| Sbjct 3632974 AGGTACCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCACGGATATTATGAACACTCAAAC 3632915 Query 23625 CTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCT 23684 | || || || | || || || |||| || || |||| ||| ||||| ||||| | Sbjct 3632914 CAATACCACCAGCAGACTTTGAAATCAAGGCACAAGTCTTCAAAGTATCGTAAATGCCAT 3632855 Query 23685 CGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAG 23744 | || || || || | |||||||| || || |||||||| | ||||| ||| Sbjct 3632854 CTATAGAATCGTCCTTCATGTTAACCAAGAAGCAAGAGGACATTTGAGGCTTGGGAGTAC 3632795 Query 23745 CGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT-TAGATTGTAC 23803 | || | |||| || ||| ||| || ||||| || | ||||| ||| ||||| Sbjct 3632794 CAGCATTGTACAGAGTGGGGGAGGCATGTGTAAAATACTTTTGAGACATGTAG-TTGTAT 3632736 Query 23804 GTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATG 23863 || || ||||| || || || || ||||| | || || | ||| |||||| Sbjct 3632735 GTTTCAATGGCCTTGGTGATATCAGAACCATGAATACCAACAGCTACTCTCATGATCATG 3632676 Query 23864 TATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTT 23923 | ||| ||||||||| | | || ||||| |||| || || || | || || || Sbjct 3632675 TGTTGGGGTCTCTCGGCGATTTTACCATTAATCTTGAGCAAGTACGATCTTTCCAAAGTC 3632616 Query 23924 TTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 || || || || || | || || |||||||| | || ||||| ||||| Sbjct 3632615 TTGAAACCGAAGTAATTGTAAGAGAAATCACGATCATAAACAATGGCTGAATT 3632563 Score = 120 bits (132), Expect = 3e-22 Identities = 344/523 (66%), Gaps = 7/523 (1%) Strand=Plus/Minus Query 22154 TAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTT 22213 || ||||| || ||||| |||||| | | ||| |||| ||||| || |||||||| Sbjct 3634391 TAGTACATTCCTGTCTTAAGACCCTTTTGCCAGCCGTAGAAATGCATACTAGTCAATTTG 3634332 Query 22214 CCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCT 22273 || | | || | ||||| | || || || ||||| ||||||||||| || | Sbjct 3634331 CCCATAGTAGGAGCTTGAATGTAAATGTTCAAAGATTGACTTTGATCGATAAAGGCAGCA 3634272 Query 22274 CGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGT 22333 ||||| || ||||||| || | ||| | || | ||||| || ||||| |||| | Sbjct 3634271 CGATCAGCAGCCATATCAATGATTGTCTTCTGAGAAAGCTCCCAAACAGTCTTATACAAT 3634212 Query 22334 TGCCTGATCTCTAACGGTATCGATTCGA-TCCTCTGGACGGACCCGTTATTGTGTATGAT 22392 | |||| || || || | | || | |||| | || || || ||| || || Sbjct 3634211 GCCTTGATATCCTCAGGGAT-GTTAGGAATATTCTGAATAGAACCATTGTTGGCAATAAT 3634153 Query 22393 CAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACG 22452 ||| || || | || ||||| || | || | || || | || | Sbjct 3634152 TCTATTCTTCATGTTCTCTCCCCACAGTCCCAAATCGACAAGGTCCTTCAACAACCATTG 3634093 Query 22453 GTTCACCACTTGAAACTCGCCGGACAAGA-CGCGGCGTTGGTAAATGTTGGATGTGAACG 22511 || || | ||| || || |||| ||||| | | || ||| |||||||||||| | | Sbjct 3634092 ATTAACAATTTGGAATTCACCGG-CAAGAACTCTACGAGAGTAGATGTTGGATGTGTAAG 3634034 Query 22512 GTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCA 22571 |||||||| |||| ||||| || || || || | || || || || ||||| || || | Sbjct 3634033 GTTCGAAACATTCGTTGTTACCAAGAATTTGTGATGTTGAGGCAGTAGGCATAGGAGCAA 3633974 Query 22572 ACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCC 22631 || || |||||||||| || ||||| | || || ||||||| | |||||||| Sbjct 3633973 CGAGAAGGGAGTTTCTCAGACCATGCTTAGCCATCTTCTTCTTGAGAGCAGCCCAGTCCC 3633914 Query 22632 ACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAA 22674 | ||||| | || || | | ||||||| ||| ||||||| Sbjct 3633913 AGAGATCAGTGGGAGTGA---TATCCCACAAATCAAATTGCAA 3633874 >seq3 Length=2773601 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||| |||| || || || || || |||| || || | || Sbjct 154805 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACTATTACTCTCGAAGTCGAGTCCTCT 154864 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | |||| | ||||| || ||| | | |||||||||| | || || ||||| Sbjct 154865 GATACTATCGACAACGTCAAGACTAAGATTCAAG-ACAAGGAAGGTATTCCTCCAGACCA 154923 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || |||||||| || || ||||||||| ||| | ||| ||||| Sbjct 154924 ACAGCGTTTGATTTTCGCTGGTAAGCAATTGGAAGACGGCCGTACTCTCTCCGACTATAA 154983 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| ||||| ||||| ||||| || |||| || Sbjct 154984 CATCCAAAAGGAATCTACTCTCCACTTGGTCCT 155016 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||||||||| || || || || || ||||| | || ||||| | || Sbjct 153893 ATGCAAATCTTCGTAAAGACCCTCACTGGTAAGACCATCACTCTTGAGGTTGAGTCCTCT 153952 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | |||| | ||||| || || || ||||||||||| | || || ||||| Sbjct 153953 GATACTATCGACAATGTCAAGACCAAG-ATTCAAGACAAGGAAGGTATTCCTCCAGACCA 154011 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || | || || || ||||| || || || ||||| | || || ||||| || Sbjct 154012 ACAAAGACTTATTTTTGCTGGTAAGCAATTAGAAGATGGCAGAACCTTGTCTGATTACAA 154071 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| ||||| |||||||| |||| ||| | || | || |||| Sbjct 154072 TATTCAAAAGGAATCTACTCTTCACTTGGTTCTTCGTCTTCGTGGTGGTA 154121 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||| |||| || || || || || |||| |||||| | || Sbjct 154577 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACTATTACTCTCGAAGTTGAATCCTCT 154636 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | | || | ||||| || ||| | | ||||||| || | || || ||||| Sbjct 154637 GATACTATTGATAACGTCAAGACCAAGATTCAAG-ACAAGGAGGGTATTCCTCCAGACCA 154695 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || |||||||| || || | || || ||| | ||| || || Sbjct 154696 ACAGCGTTTGATTTTCGCTGGTAAGCAACTCGAGGATGGCCGTACTCTCTCCGACTACAA 154755 Query 31372 CATTCAAAAAGAATCGACTCTTCA 31395 ||||||||| ||||| ||||| || Sbjct 154756 CATTCAAAAGGAATCCACTCTCCA 154779 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||||||||| || || || || || || || | || ||||| | || Sbjct 154121 ATGCAAATCTTCGTAAAGACCCTCACTGGTAAGACCATTACTCTTGAAGTTGAGTCCTCT 154180 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | || || | ||| ||||||||||| | || || ||||| Sbjct 154181 GATACTATTGATAATGTTAAGACCAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 154240 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || || ||||| || || || ||||| | || || ||||| ||| Sbjct 154241 CAAAGACTTATTTTTGCTGGTAAGCAATTAGAAGATGGCAGAACCTTGTCTGATTACAAC 154300 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| ||||| ||||| || |||| ||| | || | || |||| Sbjct 154301 ATTCAAAAGGAATCCACTCTCCACTTGGTTCTTCGTCTTCGTGGTGGTA 154349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766377711680