Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq3 129 1e-24
seq2 116 7e-21
>seq3
Length=2773601
Score = 129 bits (142), Expect = 1e-24
Identities = 248/362 (69%), Gaps = 18/362 (5%)
Strand=Plus/Minus
Query 35354 CGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTA 35413
|| || |||||||||| |||| || | | ||| ||||||||| | ||||||||
Sbjct 791919 CGAGAGTTTTTGGACAAGCGAGGACTAGAACACAGACGTGAGGGAGATCTTGGACCCGTG 791860
Query 35414 TACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTGTTCTTCCGATTATACT 35473
|| || ||||||||| | |||||||| || ||||||| || | | ||||| ||
Sbjct 791859 TATGGTTTCCAATGGAGACATTTTGGCGCCAAATATGAGGATTGCGATACTGATTACTCT 791800
Query 35474 GGAAAGGGTATTGATCAATTGGCCAAT---ATACTAAAGACCCTGAGAGAAAATCCAGAT 35530
|| || || | |||||| |||| | |||| ||| | | | |||| | ||| ||
Sbjct 791799 GGTAAAGGAGTAGATCAACTGGCAGAAGTGATACGAAAAATCAAG-GAGACA--CCATAT 791743
Query 35531 GATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTCCT 35590
|| ||| | || || ||| | ||||||||||| ||| | || ||||||||||||
Sbjct 791742 GACAGACGAATAATCATGTCAGCATGGAATCCCGCCGATATGAACGATATGGCTCTTCCA 791683
Query 35591 CCATGCCACATGACTGCTCAATTTTATGT-GGC-----TAATGG------AGAATTGTCG 35638
|| || ||| | | |||| |||||||| || |||||| ||| | ||
Sbjct 791682 CCTTGTCACGTATTTTCTCAGTTTTATGTAAGCTTCCGTAATGGTAAGCCAGAGCTTTCT 791623
Query 35639 TGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCA 35698
|| ||||| ||||| |||| | ||| | || ||||| ||||| || |||||||| ||
Sbjct 791622 TGTCAGTTATATCAAAGAAGTTGTGATATGGGCTTGGGAGTGCCATTTAATATTGCCTCT 791563
Query 35699 TA 35700
||
Sbjct 791562 TA 791561
>seq2
Length=4956242
Score = 116 bits (128), Expect = 7e-21
Identities = 308/468 (66%), Gaps = 27/468 (6%)
Strand=Plus/Plus
Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977
|||||||||||||| ||||| || |||||||| ||| |||| || || ||||||
Sbjct 3219874 GTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCTCTGGATCATTTGCCAGTATCTTCTGG 3219933
Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037
| ||||| | || | |||||||||| || | ||| || || || || || | ||
Sbjct 3219934 TTGAAGAAGCGTGGACTCATGCCTGGTCTGACGTTCTCAAACGAATTGATCTCGCGTGAT 3219993
Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097
||||| | || ||| ||||| || |||| ||| | | |||
Sbjct 3219994 GAAGGCATGCACACCGATTTTGCTTGTTTGCT------------TTTCG--GCCACCTTG 3220039
Query 102098 TCAAGAGA---AAGGATTCT-----TGAAA---TTGTCACTGAAGCCGTCCGAATTGAAC 102146
|||| ||| ||| | ||| ||||| || ||||||||||||| ||||||
Sbjct 3220040 TCAACAGACCTAAGAAGTCTGTTATTGAAAAGATTATCACTGAAGCCGTTATTATTGAAA 3220099
Query 102147 AAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGA 102206
| || || | || | | | |||| || | |||||||||| |||| | |||
Sbjct 3220100 AGGAGTTCTTGACTGATGCTTTGCCATGTAGTCTTTTGGGAATGAATGCCAAGCTTATGT 3220159
Query 102207 GCCAGTACATTGAATTTGTGGCAGATAAACTATT-GGTTGAAATGGGACTAGAAAAGCAC 102265
|||| |||||||| ||||| || || | | |||| || ||| | || || | |
Sbjct 3220160 GCCAATACATTGAGTTTGTTGCTGACAGATTATTACTTTCCCTTGGTAACAGTAAGGTA- 3220218
Query 102266 TATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAAC 102325
||||||| |||||||||||| |||||||| || || || | |||||||||
Sbjct 3220219 TATAATGCTACCAACCCCTTTGATTTCATGGAAAACATCTCATTGTCTGGCAAGACCAAC 3220278
Query 102326 TTTTTTGAAAAGAGAGTCGCCGAGTATCAACGTGCCCAGGTCATGGCT 102373
|| ||||| |||||||| | || |||||| || |||||||||
Sbjct 3220279 TTCTTTGAGAAGAGAGTGTCTGACTATCAAAAGGCAGGTGTCATGGCT 3220326
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989583949283820
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |