Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq3 129 1e-24 seq2 116 7e-21 >seq3 Length=2773601 Score = 129 bits (142), Expect = 1e-24 Identities = 248/362 (69%), Gaps = 18/362 (5%) Strand=Plus/Minus Query 35354 CGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTA 35413 || || |||||||||| |||| || | | ||| ||||||||| | |||||||| Sbjct 791919 CGAGAGTTTTTGGACAAGCGAGGACTAGAACACAGACGTGAGGGAGATCTTGGACCCGTG 791860 Query 35414 TACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTGTTCTTCCGATTATACT 35473 || || ||||||||| | |||||||| || ||||||| || | | ||||| || Sbjct 791859 TATGGTTTCCAATGGAGACATTTTGGCGCCAAATATGAGGATTGCGATACTGATTACTCT 791800 Query 35474 GGAAAGGGTATTGATCAATTGGCCAAT---ATACTAAAGACCCTGAGAGAAAATCCAGAT 35530 || || || | |||||| |||| | |||| ||| | | | |||| | ||| || Sbjct 791799 GGTAAAGGAGTAGATCAACTGGCAGAAGTGATACGAAAAATCAAG-GAGACA--CCATAT 791743 Query 35531 GATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTCCT 35590 || ||| | || || ||| | ||||||||||| ||| | || |||||||||||| Sbjct 791742 GACAGACGAATAATCATGTCAGCATGGAATCCCGCCGATATGAACGATATGGCTCTTCCA 791683 Query 35591 CCATGCCACATGACTGCTCAATTTTATGT-GGC-----TAATGG------AGAATTGTCG 35638 || || ||| | | |||| |||||||| || |||||| ||| | || Sbjct 791682 CCTTGTCACGTATTTTCTCAGTTTTATGTAAGCTTCCGTAATGGTAAGCCAGAGCTTTCT 791623 Query 35639 TGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCA 35698 || ||||| ||||| |||| | ||| | || ||||| ||||| || |||||||| || Sbjct 791622 TGTCAGTTATATCAAAGAAGTTGTGATATGGGCTTGGGAGTGCCATTTAATATTGCCTCT 791563 Query 35699 TA 35700 || Sbjct 791562 TA 791561 >seq2 Length=4956242 Score = 116 bits (128), Expect = 7e-21 Identities = 308/468 (66%), Gaps = 27/468 (6%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 |||||||||||||| ||||| || |||||||| ||| |||| || || |||||| Sbjct 3219874 GTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCTCTGGATCATTTGCCAGTATCTTCTGG 3219933 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | ||||| | || | |||||||||| || | ||| || || || || || | || Sbjct 3219934 TTGAAGAAGCGTGGACTCATGCCTGGTCTGACGTTCTCAAACGAATTGATCTCGCGTGAT 3219993 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 ||||| | || ||| ||||| || |||| ||| | | ||| Sbjct 3219994 GAAGGCATGCACACCGATTTTGCTTGTTTGCT------------TTTCG--GCCACCTTG 3220039 Query 102098 TCAAGAGA---AAGGATTCT-----TGAAA---TTGTCACTGAAGCCGTCCGAATTGAAC 102146 |||| ||| ||| | ||| ||||| || ||||||||||||| |||||| Sbjct 3220040 TCAACAGACCTAAGAAGTCTGTTATTGAAAAGATTATCACTGAAGCCGTTATTATTGAAA 3220099 Query 102147 AAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGA 102206 | || || | || | | | |||| || | |||||||||| |||| | ||| Sbjct 3220100 AGGAGTTCTTGACTGATGCTTTGCCATGTAGTCTTTTGGGAATGAATGCCAAGCTTATGT 3220159 Query 102207 GCCAGTACATTGAATTTGTGGCAGATAAACTATT-GGTTGAAATGGGACTAGAAAAGCAC 102265 |||| |||||||| ||||| || || | | |||| || ||| | || || | | Sbjct 3220160 GCCAATACATTGAGTTTGTTGCTGACAGATTATTACTTTCCCTTGGTAACAGTAAGGTA- 3220218 Query 102266 TATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAAC 102325 ||||||| |||||||||||| |||||||| || || || | ||||||||| Sbjct 3220219 TATAATGCTACCAACCCCTTTGATTTCATGGAAAACATCTCATTGTCTGGCAAGACCAAC 3220278 Query 102326 TTTTTTGAAAAGAGAGTCGCCGAGTATCAACGTGCCCAGGTCATGGCT 102373 || ||||| |||||||| | || |||||| || ||||||||| Sbjct 3220279 TTCTTTGAGAAGAGAGTGTCTGACTATCAAAAGGCAGGTGTCATGGCT 3220326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583949283820