Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq1 273 2e-68
seq2 190 2e-43
>seq1
Length=5930846
Score = 273 bits (302), Expect = 2e-68
Identities = 608/904 (67%), Gaps = 10/904 (1%)
Strand=Plus/Plus
Query 37741 TGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGAT 37800
|| |||||||| || || ||||| ||| |||| || || | ||| ||||||| |||
Sbjct 4966766 TGGATAATCTCCGTGCATAGATTGGAAGATTTAATCGTACCAAGATTATTTTGATTTGAT 4966825
Query 37801 TTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCG 37860
||| | ||||| |||||||| || || || | || ||||| || | ||||| |||
Sbjct 4966826 TTTCTGTTACAGGAATCTTTGTAAAGCATGAATGGAGTTCCAGTCTCGACTTGAGTCTCT 4966885
Query 37861 ATAATAGATTTCCATAAACTTCTTG-CTTTAACGATCGCTTTAAttt---ttttCTTTGT 37916
| ||| | ||| | ||||| | || | || | || || | ||||||||
Sbjct 4966886 AAAATGGCAAACCAGAG-CTTCTGGGCTCTGACCTT-GCGAACATGTCTGTTTTCTTT-- 4966941
Query 37917 TTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACA 37976
||| ||| | | || || | | || |||| || | || || |||| || |||
Sbjct 4966942 TTCATATCTTTTGTACAAAGTTTCGAATTCATCACCGTAGACGTCAGATAAACCAGGAGC 4967001
Query 37977 TTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATC 38036
||| || | | || ||||||||| | || ||| || ||| || |||||
Sbjct 4967002 TTCATCAGGTGAAAATAAGCACCATTCTTGGTTGTTGCTTACCTTTTTCATGAACAAATC 4967061
Query 38037 AGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTT 38096
||| | ||| | ||| ||| || ||| | ||| ||||||| || || ||| ||
Sbjct 4967062 AGGGATCCAAAGAGCATAAAACAAGTCTCGAGCTCTTAATTCTTCTTTGCCGTGATTTTT 4967121
Query 38097 TCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGC 38156
|| ||| || ||| || ||||||||| |||||| ||||| | ||||| | | ||
Sbjct 4967122 TCGTAACTCTAAAAACTCTAATATATCACTGTGCCAAGGTTCCAAGTAAATAGCAAAAGC 4967181
Query 38157 TCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAA 38216
||||||||||| | ||| ||||||| | ||| || | || || ||| | | |||||
Sbjct 4967182 ACCTGGTCTTTTGTTACCACCCTGATCTACATACCTGGCAGTATTGTTAAAAACTCTTAG 4967241
Query 38217 CATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCG 38276
||| || || || ||||| || |||| || | || | || |||| |||| | | ||
Sbjct 4967242 CATCGGCACAATTCCATTGGAGCTGCCATTACTCCCAGCAATGTAAGCACCCGTCGACCG 4967301
Query 38277 TATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTT 38336
|||||| || | || || ||||||||| |||||| || | |||||| | |||
Sbjct 4967302 GATATTATGAATGTGGAGACCAATCCCACCTGCAGTTTTTGAGATCATAGCGCAGTCTTT 4967361
Query 38337 TAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGA 38396
|| ||||| | || |||||||| || || || || | || | || || ||
Sbjct 4967362 TAGGGTATCGTAAATGCCTTCTATGGAATCCTCTTTCATAGCTACCAAGAAGCAGGACGA 4967421
Query 38397 CATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTT 38456
| |||||| || || || | ||| |||| ||| || || ||||| |||| ||||
Sbjct 4967422 TAATTGAGGATTAGGCGTGCCAGAGTTGAATAGTGTTGGTGACGCATGGGTGAAATATTT 4967481
Query 38457 TTCCGACAAATAATT-ATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTA 38515
||||||| | ||||| |||||| || || || ||||||||| | ||| |||||||| |
Sbjct 4967482 TTCCGAC-ATTAATTGATATGTCTCGATGACCCTATCTATATCTCTGCCATGAATACCCA 4967540
Query 38516 GAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTA 38575
| || ||||||| ||| ||||| || ||||| || | | | || | |||||| |
Sbjct 4967541 CCGCCACTCTCATTAACATCTGTTGCGGCCTTTCAATAACTCTGCCATACATTTTAAGCA 4967600
Query 38576 GATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTATG 38635
| |||||| |||| | || |||| ||| |||||| | || |||||||||| |||
Sbjct 4967601 GGTACGATCTTTCGAGCGTCTTTAATCCGAAATAAGTGTACTCATAATCTCTAGAGTAGT 4967660
Query 38636 CTAT 38639
||||
Sbjct 4967661 CTAT 4967664
Score = 134 bits (148), Expect = 1e-26
Identities = 327/490 (67%), Gaps = 13/490 (3%)
Strand=Plus/Plus
Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849
|| || ||||| | ||||| || || | ||| |||| | ||| |||||||| |||
Sbjct 4965770 TCCACGGTGAACTGAATAGGTGCAGAAGCTGCTTTCGTTCGTAAATAGTACATTCCTGTT 4965829
Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909
|||| |||| |||| || |||||||||||||| || |||||| | ||||||||
Sbjct 4965830 TTTAACCCCTTCTTCCAGCCATAAAAATGCATACTCGTGAGTTTTCCTGCAGTAGGATTT 4965889
Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATA-AACGCACCTCTGTCGGCTGCCAT 36968
| || | || |||| ||| ||||| ||| |||| || | ||| ||||||||
Sbjct 4965890 TTCATGAAAATATTCATACTCTGAGACTGATCAATATAACG-GCCACGGTCAGCTGCCAT 4965948
Query 36969 TTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATC 37028
|| | |||| ||||| | ||||| | || |||||||| | ||| | | |
Sbjct 4965949 GTCAATAATAACCTTTTGGCTCAATTCCCAGGCAGTCTTATATATATCTTTCAGCT--CC 4966006
Query 37029 TGGTAAATCT-----AAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATG 37083
| | ||||| | | ||||||||| |||| | | ||| ||||| | ||
Sbjct 4966007 TTGGGAATCTCGGGGATGTTTTGAATAGAGCCATCCTCGCTAATAATCATATTCCTGATA 4966066
Query 37084 TCATTATTCCACATATTTCTACTT--ATTAGTTCTCTCAATAGGTGTGGATTTACAACCT 37141
||||||||||||| | | || | || || ||| ||||| || ||||| |
Sbjct 4966067 TCATTATTCCACAGCCT--AAGTTGCACAAGGTCCTTCACTAGGTACTCGTTGACAACTT 4966124
Query 37142 GAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACT 37201
| || || ||||| | ||| | || | ||| ||||| || |||||||| | | |
Sbjct 4966125 GGAATTCACCAGAAAGTACACGCCTCGCATAGATATTCGATGTGATTGGTTCAAAGCATT 4966184
Query 37202 CATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTAT 37261
||||| || | ||||| ||||| || || || ||||||||||||| || || ||
Sbjct 4966185 CATTAAAACCAAGAATTTGCGATGTTGAAGCTGTGGGCATTGGTGCTACCAGCAGAGAAT 4966244
Query 37262 TTCTCAATCC 37271
||||||||||
Sbjct 4966245 TTCTCAATCC 4966254
>seq2
Length=4956242
Score = 190 bits (210), Expect = 2e-43
Identities = 512/773 (66%), Gaps = 15/773 (2%)
Strand=Plus/Minus
Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849
||||| || |||| |||||| ||||| | || ||| | || || |||||||| ||
Sbjct 3634436 TCAACAGTAAATTGAATAGGAGCGGATGCTGCTTGTGTACGCAAGTAGTACATTCCTGTC 3634377
Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTAT-GTAGGATT 36908
|| || ||| | ||| ||||| ||||||||||| |||| ||| || || ||||||
Sbjct 3634376 TTAAGACCCTTTTGCCAGCCGTAGAAATGCATACTAGTCAATTT-GCCCATAGTAGGAGC 3634318
Query 36909 ATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCAT 36968
| || || || ||| |||||||||||||| ||||| ||| | | || || |||||
Sbjct 3634317 TTGAATGTAAATGTTCAAAGATTGACTTTGATCGATAAAGGCAGCACGATCAGCAGCCAT 3634258
Query 36969 TTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATC 37028
|| | || || ||||| | ||||||||| || ||||| | | || |||| ||
Sbjct 3634257 ATCAATGATTGTCTTCTGAGAAAGCTCCCAAACAGTCTTATACAATGCCTTGATATCCTC 3634198
Query 37029 TGGTAAATCTA--AATGT--TGAATAGAACCATTATGTAACACAATTGTATTCTTTATGT 37084
|| | | || ||| | |||||||||||||| | | |||| ||||||| ||||
Sbjct 3634197 AGGGATGT-TAGGAATATTCTGAATAGAACCATTGTTGGCAATAATTCTATTCTTCATGT 3634139
Query 37085 CATTATTCCACATATTTCTACTT--ATTAGTTCTCTCAATAGGTGTGGATTTACAACCTG 37142
| ||| || | | | | | | || || |||| | | |||| |||| ||
Sbjct 3634138 --TCTCTCCCCACAGTCCCAAATCGACAAGGTCCTTCAACAACCATTGATTAACAATTTG 3634081
Query 37143 AAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTC 37202
|| || || | | ||||| | | || || ||| || || ||||| | | ||
Sbjct 3634080 GAATTCACCGGCAAGAACTCTACGAGAGTAGATGTTGGATGTGTAAGGTTCGAAACATTC 3634021
Query 37203 ATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATT 37262
|| |||| | ||||| ||||| || ||||||||||| || || | |||||| ||
Sbjct 3634020 GTTGTTACCAAGAATTTGTGATGTTGAGGCAGTAGGCATAGGAGCAACGAGAAGGGAGTT 3633961
Query 37263 TCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG 37322
||||| ||||| || || |||| || || || ||| ||||| | ||| || ||
Sbjct 3633960 TCTCAGACCATGCTTAGCCATCTTCTTCTTGAGAGCAGCCCAGTCCCAGAGATCAGTGGG 3633901
Query 37323 GTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGT 37382
| | ||||| |||| |||| | || ||| || || |||||| | | || ||
Sbjct 3633900 AGTGATATCCCACAAATCAAATTGCAAAAGACCCTTTGAGGCAGGAGAACCTTGGTAAGT 3633841
Query 37383 CTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAAC--TAGATTCTAGTGCGGCATAATAT 37440
|||||| |||||||| | || || |||| |||| |||||| | || |||| |||
Sbjct 3633840 CTCATAGGGTCCGTACAATTCGGCGAGTT--CAACCGAAGATTCAACAGCAGCATGATAG 3633783
Query 37441 ATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCC 37500
|| || || |||||| | || ||| || || || | ||||||| | |
Sbjct 3633782 ATGGTCTCAGCAATTTGAACGTTCAATTGCTTGGCCTCAGGGGAGTCGAATGGCAAACGG 3633723
Query 37501 AATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATG 37553
| ||||| |||| |||||||| |||| ||| | | | |||||||| ||
Sbjct 3633722 AGAGCCATAAAGGCATCGGCCAAACCTTGAATACCAAGAGCAATGGGTCTGTG 3633670
Score = 150 bits (166), Expect = 2e-31
Identities = 401/610 (66%), Gaps = 2/610 (0%)
Strand=Plus/Minus
Query 38025 CATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTT 38084
||| || || ||||| | ||||| || || |||||| ||| | |||||| ||
Sbjct 3633186 CATGAACAAGTCAGGAATCCATAGAGCCAAGAACAAATCTCTGGCACGGACTTCTTCCTT 3633127
Query 38085 CCCTACATTCTTTCTTAAGCTTAGAAAAT-CGAATATATCAGCGTGCCATGGTTCTATAT 38143
|| |||||||| | ||| | ||| | || | |||| | ||||| || || | |
Sbjct 3633126 ACCGTGATTCTTTCGCA-GCTCAATGAATTCAAAAACATCATCATGCCAAGGCTCCAAGT 3633068
Query 38144 AAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTAT 38203
| || | | || ||||||| |||| ||| ||||||| || ||||||| | || ||||
Sbjct 3633067 ACATGGCAAAAGCACCTGGTCGCTTATTACCACCCTGATCAACATATCTAGCAGTATTAT 3633008
Query 38204 TATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAG 38263
| | | ||| ||||| || || ||||| || || | ||||| | || | || || |
Sbjct 3633007 TGAAAACTCTCAACATGGGAACAATACCGTTTGAGGTACCGTTAGTTCCAGCAATGTAGG 3632948
Query 38264 TACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTA 38323
|| |||| || |||||| | ||| || || ||||| ||| ||||| || |
Sbjct 3632947 AGCCAGTAGCACGGATATTATGAACACTCAAACCAATACCACCAGCAGACTTTGAAATCA 3632888
Query 38324 AAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTA 38383
| || || || || ||||| | || || |||||| || ||||| || | |
Sbjct 3632887 AGGCACAAGTCTTCAAAGTATCGTAAATGCCATCTATAGAATCGTCCTTCATGTTAACCA 3632828
Query 38384 TAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCAT 38443
|| ||| |||||||||||| ||||| || || || | | || || || ||||
Sbjct 3632827 AGAAGCAAGAGGACATTTGAGGCTTGGGAGTACCAGCATTGTACAGAGTGGGGGAGGCAT 3632768
Query 38444 GTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGC 38503
|| | || | |||| |||| || || |||||||| || | | |||||| |
Sbjct 3632767 GTGTAAAATACTTTTGAGACATGTAGTTGTATGTTTCAATGGCCTTGGTGATATCAGAAC 3632708
Query 38504 CGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTAT 38563
| |||||||| | || ||| ||||| | ||| ||||| ||||| || |||||| ||
Sbjct 3632707 CATGAATACCAACAGCTACTCTCATGATCATGTGTTGGGGTCTCTCGGCGATTTTACCAT 3632648
Query 38564 TCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAAT 38623
| || || | |||||| |||| || || || | || || ||| | || || |||
Sbjct 3632647 TAATCTTGAGCAAGTACGATCTTTCCAAAGTCTTGAAACCGAAGTAATTGTAAGAGAAAT 3632588
Query 38624 CTCTATCGTA 38633
| | ||| ||
Sbjct 3632587 CACGATCATA 3632578
Score = 125 bits (138), Expect = 7e-24
Identities = 492/767 (64%), Gaps = 10/767 (1%)
Strand=Plus/Minus
Query 11455 TAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTAT 11514
||||||||| || || || || || || || || |||| | |||||| || |
Sbjct 3220194 TAATAATCTGTCAGCAACAAACTCAATGTATTGGCACATAAGCTTGGCATTCATTCCCAA 3220135
Query 11515 AAGATCCACC-GGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGA 11573
|||| | || || | |||| | ||||| ||||||||||| ||| |||| || ||| |||
Sbjct 3220134 AAGA-CTACATGGCAAAGCATCAGTCAAGAACTCCTTTTCAATAATAACGGCTTCAGTGA 3220076
Query 11574 TTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACG 11633
| ||| ||||| ||| ||| | | | || || | ||||| |
Sbjct 3220075 TAATCTTTTCAATAACAGACTTCTTAGGTCTGTTGACAAGGTGGCCGAAAAGCAAACAAG 3220016
Query 11634 CAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGG 11693
||||||| || | ||||| || | || | ||| || || || || | || |
Sbjct 3220015 CAAAATCGGTGTGCATGCCTTCATCACGCGAGATCAATTCGTTTGAGAACGTCAGACCAG 3219956
Query 11694 GCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTC 11753
|||| | ||| || || || | ||| || ||| |||||||| ||||| ||||| || |
Sbjct 3219955 GCATGAGTCCACGCTTCTTCAACCAGAAGATACTGGCAAATGATCCAGAGAAGAAGATAC 3219896
Query 11754 CCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTGTTGCT-AGATATCC 11810
|||| || || ||||| || || | | || || | | || | | || ||||
Sbjct 3219895 CCTCAACGGCAGCAAAGGCAACGAGACGCTCAGCAAAAGTGGACTGATCATCAGCAATCC 3219836
Query 11811 ATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATA 11870
|| ||||| ||||| ||||| || | ||| || | || ||||| | || |
Sbjct 3219835 ATCGGAGAGCCCAGTCAGCCTTCTTCTTAATACATGGAATATTGTCAATAGCATGGAACA 3219776
Query 11871 AATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTG 11930
|| | || || ||| | | ||| || || || | ||| || | ||||
Sbjct 3219775 AAAAGTTAGCCTCCTTAGCATCCTTGATATAAGTGTCAATAAGTAATGAGTAGGTCTCTG 3219716
Query 11931 AATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTA 11990
||| || || ||||| ||||| || || || ||||| |||||| | | || |
Sbjct 3219715 CATGGATGTTCTCCATCATAATTTGGAAACCGTAAAAACACTTTGCCTCGGGAATTTGAA 3219656
Query 11991 CATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAA 12050
| || || | |||||||| | || ||||| || || |||||||| || ||||| |
Sbjct 3219655 CTTCACCAGAGAATCTTTCAACCAAGTTCTCGTTGACGATACCATCTGAAGCAGCAAAGA 3219596
Query 12051 ATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAAT----TTATCCCAATCA 12106
|||| || | | | ||||| || | || || | | |||| | ||||| |||
Sbjct 3219595 ATGCAAGGACACGAGAGATAAAAAATCTCTCATCATCA-TTAAGACGGTGCTCCCAGTCA 3219537
Query 12107 TCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTA 12166
| || ||| |||||| | ||||||| | ||||| ||| ||| | | || ||
Sbjct 3219536 CTGATGTCCTTTCCTAAATCAATTTCTTCAGCAGTCCAGAAAGAAGCCTCAGCCTGCTTG 3219477
Query 12167 TACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213
||||||| ||| || ||||| |||||||||||||| | ||| || ||
Sbjct 3219476 TACATTTGCCAAATCTCATGGTACTTAATAGGGAACAGAACAAATCT 3219430
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468524776573760
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