Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1 273 2e-68 seq2 190 2e-43 >seq1 Length=5930846 Score = 273 bits (302), Expect = 2e-68 Identities = 608/904 (67%), Gaps = 10/904 (1%) Strand=Plus/Plus Query 37741 TGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGAT 37800 || |||||||| || || ||||| ||| |||| || || | ||| ||||||| ||| Sbjct 4966766 TGGATAATCTCCGTGCATAGATTGGAAGATTTAATCGTACCAAGATTATTTTGATTTGAT 4966825 Query 37801 TTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCG 37860 ||| | ||||| |||||||| || || || | || ||||| || | ||||| ||| Sbjct 4966826 TTTCTGTTACAGGAATCTTTGTAAAGCATGAATGGAGTTCCAGTCTCGACTTGAGTCTCT 4966885 Query 37861 ATAATAGATTTCCATAAACTTCTTG-CTTTAACGATCGCTTTAAttt---ttttCTTTGT 37916 | ||| | ||| | ||||| | || | || | || || | |||||||| Sbjct 4966886 AAAATGGCAAACCAGAG-CTTCTGGGCTCTGACCTT-GCGAACATGTCTGTTTTCTTT-- 4966941 Query 37917 TTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACA 37976 ||| ||| | | || || | | || |||| || | || || |||| || ||| Sbjct 4966942 TTCATATCTTTTGTACAAAGTTTCGAATTCATCACCGTAGACGTCAGATAAACCAGGAGC 4967001 Query 37977 TTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATC 38036 ||| || | | || ||||||||| | || ||| || ||| || ||||| Sbjct 4967002 TTCATCAGGTGAAAATAAGCACCATTCTTGGTTGTTGCTTACCTTTTTCATGAACAAATC 4967061 Query 38037 AGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTT 38096 ||| | ||| | ||| ||| || ||| | ||| ||||||| || || ||| || Sbjct 4967062 AGGGATCCAAAGAGCATAAAACAAGTCTCGAGCTCTTAATTCTTCTTTGCCGTGATTTTT 4967121 Query 38097 TCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGC 38156 || ||| || ||| || ||||||||| |||||| ||||| | ||||| | | || Sbjct 4967122 TCGTAACTCTAAAAACTCTAATATATCACTGTGCCAAGGTTCCAAGTAAATAGCAAAAGC 4967181 Query 38157 TCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAA 38216 ||||||||||| | ||| ||||||| | ||| || | || || ||| | | ||||| Sbjct 4967182 ACCTGGTCTTTTGTTACCACCCTGATCTACATACCTGGCAGTATTGTTAAAAACTCTTAG 4967241 Query 38217 CATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCG 38276 ||| || || || ||||| || |||| || | || | || |||| |||| | | || Sbjct 4967242 CATCGGCACAATTCCATTGGAGCTGCCATTACTCCCAGCAATGTAAGCACCCGTCGACCG 4967301 Query 38277 TATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTT 38336 |||||| || | || || ||||||||| |||||| || | |||||| | ||| Sbjct 4967302 GATATTATGAATGTGGAGACCAATCCCACCTGCAGTTTTTGAGATCATAGCGCAGTCTTT 4967361 Query 38337 TAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGA 38396 || ||||| | || |||||||| || || || || | || | || || || Sbjct 4967362 TAGGGTATCGTAAATGCCTTCTATGGAATCCTCTTTCATAGCTACCAAGAAGCAGGACGA 4967421 Query 38397 CATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTT 38456 | |||||| || || || | ||| |||| ||| || || ||||| |||| |||| Sbjct 4967422 TAATTGAGGATTAGGCGTGCCAGAGTTGAATAGTGTTGGTGACGCATGGGTGAAATATTT 4967481 Query 38457 TTCCGACAAATAATT-ATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTA 38515 ||||||| | ||||| |||||| || || || ||||||||| | ||| |||||||| | Sbjct 4967482 TTCCGAC-ATTAATTGATATGTCTCGATGACCCTATCTATATCTCTGCCATGAATACCCA 4967540 Query 38516 GAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTA 38575 | || ||||||| ||| ||||| || ||||| || | | | || | |||||| | Sbjct 4967541 CCGCCACTCTCATTAACATCTGTTGCGGCCTTTCAATAACTCTGCCATACATTTTAAGCA 4967600 Query 38576 GATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTATG 38635 | |||||| |||| | || |||| ||| |||||| | || |||||||||| ||| Sbjct 4967601 GGTACGATCTTTCGAGCGTCTTTAATCCGAAATAAGTGTACTCATAATCTCTAGAGTAGT 4967660 Query 38636 CTAT 38639 |||| Sbjct 4967661 CTAT 4967664 Score = 134 bits (148), Expect = 1e-26 Identities = 327/490 (67%), Gaps = 13/490 (3%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || ||||| | ||||| || || | ||| |||| | ||| |||||||| ||| Sbjct 4965770 TCCACGGTGAACTGAATAGGTGCAGAAGCTGCTTTCGTTCGTAAATAGTACATTCCTGTT 4965829 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 |||| |||| |||| || |||||||||||||| || |||||| | |||||||| Sbjct 4965830 TTTAACCCCTTCTTCCAGCCATAAAAATGCATACTCGTGAGTTTTCCTGCAGTAGGATTT 4965889 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATA-AACGCACCTCTGTCGGCTGCCAT 36968 | || | || |||| ||| ||||| ||| |||| || | ||| |||||||| Sbjct 4965890 TTCATGAAAATATTCATACTCTGAGACTGATCAATATAACG-GCCACGGTCAGCTGCCAT 4965948 Query 36969 TTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATC 37028 || | |||| ||||| | ||||| | || |||||||| | ||| | | | Sbjct 4965949 GTCAATAATAACCTTTTGGCTCAATTCCCAGGCAGTCTTATATATATCTTTCAGCT--CC 4966006 Query 37029 TGGTAAATCT-----AAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATG 37083 | | ||||| | | ||||||||| |||| | | ||| ||||| | || Sbjct 4966007 TTGGGAATCTCGGGGATGTTTTGAATAGAGCCATCCTCGCTAATAATCATATTCCTGATA 4966066 Query 37084 TCATTATTCCACATATTTCTACTT--ATTAGTTCTCTCAATAGGTGTGGATTTACAACCT 37141 ||||||||||||| | | || | || || ||| ||||| || ||||| | Sbjct 4966067 TCATTATTCCACAGCCT--AAGTTGCACAAGGTCCTTCACTAGGTACTCGTTGACAACTT 4966124 Query 37142 GAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACT 37201 | || || ||||| | ||| | || | ||| ||||| || |||||||| | | | Sbjct 4966125 GGAATTCACCAGAAAGTACACGCCTCGCATAGATATTCGATGTGATTGGTTCAAAGCATT 4966184 Query 37202 CATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTAT 37261 ||||| || | ||||| ||||| || || || ||||||||||||| || || || Sbjct 4966185 CATTAAAACCAAGAATTTGCGATGTTGAAGCTGTGGGCATTGGTGCTACCAGCAGAGAAT 4966244 Query 37262 TTCTCAATCC 37271 |||||||||| Sbjct 4966245 TTCTCAATCC 4966254 >seq2 Length=4956242 Score = 190 bits (210), Expect = 2e-43 Identities = 512/773 (66%), Gaps = 15/773 (2%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| || |||| |||||| ||||| | || ||| | || || |||||||| || Sbjct 3634436 TCAACAGTAAATTGAATAGGAGCGGATGCTGCTTGTGTACGCAAGTAGTACATTCCTGTC 3634377 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTAT-GTAGGATT 36908 || || ||| | ||| ||||| ||||||||||| |||| ||| || || |||||| Sbjct 3634376 TTAAGACCCTTTTGCCAGCCGTAGAAATGCATACTAGTCAATTT-GCCCATAGTAGGAGC 3634318 Query 36909 ATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCAT 36968 | || || || ||| |||||||||||||| ||||| ||| | | || || ||||| Sbjct 3634317 TTGAATGTAAATGTTCAAAGATTGACTTTGATCGATAAAGGCAGCACGATCAGCAGCCAT 3634258 Query 36969 TTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATC 37028 || | || || ||||| | ||||||||| || ||||| | | || |||| || Sbjct 3634257 ATCAATGATTGTCTTCTGAGAAAGCTCCCAAACAGTCTTATACAATGCCTTGATATCCTC 3634198 Query 37029 TGGTAAATCTA--AATGT--TGAATAGAACCATTATGTAACACAATTGTATTCTTTATGT 37084 || | | || ||| | |||||||||||||| | | |||| ||||||| |||| Sbjct 3634197 AGGGATGT-TAGGAATATTCTGAATAGAACCATTGTTGGCAATAATTCTATTCTTCATGT 3634139 Query 37085 CATTATTCCACATATTTCTACTT--ATTAGTTCTCTCAATAGGTGTGGATTTACAACCTG 37142 | ||| || | | | | | | || || |||| | | |||| |||| || Sbjct 3634138 --TCTCTCCCCACAGTCCCAAATCGACAAGGTCCTTCAACAACCATTGATTAACAATTTG 3634081 Query 37143 AAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTC 37202 || || || | | ||||| | | || || ||| || || ||||| | | || Sbjct 3634080 GAATTCACCGGCAAGAACTCTACGAGAGTAGATGTTGGATGTGTAAGGTTCGAAACATTC 3634021 Query 37203 ATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATT 37262 || |||| | ||||| ||||| || ||||||||||| || || | |||||| || Sbjct 3634020 GTTGTTACCAAGAATTTGTGATGTTGAGGCAGTAGGCATAGGAGCAACGAGAAGGGAGTT 3633961 Query 37263 TCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG 37322 ||||| ||||| || || |||| || || || ||| ||||| | ||| || || Sbjct 3633960 TCTCAGACCATGCTTAGCCATCTTCTTCTTGAGAGCAGCCCAGTCCCAGAGATCAGTGGG 3633901 Query 37323 GTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGT 37382 | | ||||| |||| |||| | || ||| || || |||||| | | || || Sbjct 3633900 AGTGATATCCCACAAATCAAATTGCAAAAGACCCTTTGAGGCAGGAGAACCTTGGTAAGT 3633841 Query 37383 CTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAAC--TAGATTCTAGTGCGGCATAATAT 37440 |||||| |||||||| | || || |||| |||| |||||| | || |||| ||| Sbjct 3633840 CTCATAGGGTCCGTACAATTCGGCGAGTT--CAACCGAAGATTCAACAGCAGCATGATAG 3633783 Query 37441 ATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCC 37500 || || || |||||| | || ||| || || || | ||||||| | | Sbjct 3633782 ATGGTCTCAGCAATTTGAACGTTCAATTGCTTGGCCTCAGGGGAGTCGAATGGCAAACGG 3633723 Query 37501 AATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATG 37553 | ||||| |||| |||||||| |||| ||| | | | |||||||| || Sbjct 3633722 AGAGCCATAAAGGCATCGGCCAAACCTTGAATACCAAGAGCAATGGGTCTGTG 3633670 Score = 150 bits (166), Expect = 2e-31 Identities = 401/610 (66%), Gaps = 2/610 (0%) Strand=Plus/Minus Query 38025 CATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTT 38084 ||| || || ||||| | ||||| || || |||||| ||| | |||||| || Sbjct 3633186 CATGAACAAGTCAGGAATCCATAGAGCCAAGAACAAATCTCTGGCACGGACTTCTTCCTT 3633127 Query 38085 CCCTACATTCTTTCTTAAGCTTAGAAAAT-CGAATATATCAGCGTGCCATGGTTCTATAT 38143 || |||||||| | ||| | ||| | || | |||| | ||||| || || | | Sbjct 3633126 ACCGTGATTCTTTCGCA-GCTCAATGAATTCAAAAACATCATCATGCCAAGGCTCCAAGT 3633068 Query 38144 AAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTAT 38203 | || | | || ||||||| |||| ||| ||||||| || ||||||| | || |||| Sbjct 3633067 ACATGGCAAAAGCACCTGGTCGCTTATTACCACCCTGATCAACATATCTAGCAGTATTAT 3633008 Query 38204 TATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAG 38263 | | | ||| ||||| || || ||||| || || | ||||| | || | || || | Sbjct 3633007 TGAAAACTCTCAACATGGGAACAATACCGTTTGAGGTACCGTTAGTTCCAGCAATGTAGG 3632948 Query 38264 TACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTA 38323 || |||| || |||||| | ||| || || ||||| ||| ||||| || | Sbjct 3632947 AGCCAGTAGCACGGATATTATGAACACTCAAACCAATACCACCAGCAGACTTTGAAATCA 3632888 Query 38324 AAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTA 38383 | || || || || ||||| | || || |||||| || ||||| || | | Sbjct 3632887 AGGCACAAGTCTTCAAAGTATCGTAAATGCCATCTATAGAATCGTCCTTCATGTTAACCA 3632828 Query 38384 TAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCAT 38443 || ||| |||||||||||| ||||| || || || | | || || || |||| Sbjct 3632827 AGAAGCAAGAGGACATTTGAGGCTTGGGAGTACCAGCATTGTACAGAGTGGGGGAGGCAT 3632768 Query 38444 GTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGC 38503 || | || | |||| |||| || || |||||||| || | | |||||| | Sbjct 3632767 GTGTAAAATACTTTTGAGACATGTAGTTGTATGTTTCAATGGCCTTGGTGATATCAGAAC 3632708 Query 38504 CGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTAT 38563 | |||||||| | || ||| ||||| | ||| ||||| ||||| || |||||| || Sbjct 3632707 CATGAATACCAACAGCTACTCTCATGATCATGTGTTGGGGTCTCTCGGCGATTTTACCAT 3632648 Query 38564 TCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAAT 38623 | || || | |||||| |||| || || || | || || ||| | || || ||| Sbjct 3632647 TAATCTTGAGCAAGTACGATCTTTCCAAAGTCTTGAAACCGAAGTAATTGTAAGAGAAAT 3632588 Query 38624 CTCTATCGTA 38633 | | ||| || Sbjct 3632587 CACGATCATA 3632578 Score = 125 bits (138), Expect = 7e-24 Identities = 492/767 (64%), Gaps = 10/767 (1%) Strand=Plus/Minus Query 11455 TAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTAT 11514 ||||||||| || || || || || || || || |||| | |||||| || | Sbjct 3220194 TAATAATCTGTCAGCAACAAACTCAATGTATTGGCACATAAGCTTGGCATTCATTCCCAA 3220135 Query 11515 AAGATCCACC-GGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGA 11573 |||| | || || | |||| | ||||| ||||||||||| ||| |||| || ||| ||| Sbjct 3220134 AAGA-CTACATGGCAAAGCATCAGTCAAGAACTCCTTTTCAATAATAACGGCTTCAGTGA 3220076 Query 11574 TTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACG 11633 | ||| ||||| ||| ||| | | | || || | ||||| | Sbjct 3220075 TAATCTTTTCAATAACAGACTTCTTAGGTCTGTTGACAAGGTGGCCGAAAAGCAAACAAG 3220016 Query 11634 CAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGG 11693 ||||||| || | ||||| || | || | ||| || || || || | || | Sbjct 3220015 CAAAATCGGTGTGCATGCCTTCATCACGCGAGATCAATTCGTTTGAGAACGTCAGACCAG 3219956 Query 11694 GCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTC 11753 |||| | ||| || || || | ||| || ||| |||||||| ||||| ||||| || | Sbjct 3219955 GCATGAGTCCACGCTTCTTCAACCAGAAGATACTGGCAAATGATCCAGAGAAGAAGATAC 3219896 Query 11754 CCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTGTTGCT-AGATATCC 11810 |||| || || ||||| || || | | || || | | || | | || |||| Sbjct 3219895 CCTCAACGGCAGCAAAGGCAACGAGACGCTCAGCAAAAGTGGACTGATCATCAGCAATCC 3219836 Query 11811 ATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATA 11870 || ||||| ||||| ||||| || | ||| || | || ||||| | || | Sbjct 3219835 ATCGGAGAGCCCAGTCAGCCTTCTTCTTAATACATGGAATATTGTCAATAGCATGGAACA 3219776 Query 11871 AATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTG 11930 || | || || ||| | | ||| || || || | ||| || | |||| Sbjct 3219775 AAAAGTTAGCCTCCTTAGCATCCTTGATATAAGTGTCAATAAGTAATGAGTAGGTCTCTG 3219716 Query 11931 AATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTA 11990 ||| || || ||||| ||||| || || || ||||| |||||| | | || | Sbjct 3219715 CATGGATGTTCTCCATCATAATTTGGAAACCGTAAAAACACTTTGCCTCGGGAATTTGAA 3219656 Query 11991 CATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAA 12050 | || || | |||||||| | || ||||| || || |||||||| || ||||| | Sbjct 3219655 CTTCACCAGAGAATCTTTCAACCAAGTTCTCGTTGACGATACCATCTGAAGCAGCAAAGA 3219596 Query 12051 ATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAAT----TTATCCCAATCA 12106 |||| || | | | ||||| || | || || | | |||| | ||||| ||| Sbjct 3219595 ATGCAAGGACACGAGAGATAAAAAATCTCTCATCATCA-TTAAGACGGTGCTCCCAGTCA 3219537 Query 12107 TCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTA 12166 | || ||| |||||| | ||||||| | ||||| ||| ||| | | || || Sbjct 3219536 CTGATGTCCTTTCCTAAATCAATTTCTTCAGCAGTCCAGAAAGAAGCCTCAGCCTGCTTG 3219477 Query 12167 TACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 ||||||| ||| || ||||| |||||||||||||| | ||| || || Sbjct 3219476 TACATTTGCCAAATCTCATGGTACTTAATAGGGAACAGAACAAATCT 3219430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524776573760