Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq3 95.1 1e-14
>seq3
Length=2773601
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | ||| ||||| | || || || ||||||||||| ||||| |
Sbjct 154347 CCACCACGAAGACGAAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAC 154288
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || || ||||| | || ||||||||| | || || | ||| || || |||||
Sbjct 154287 AAGGTTCTGCCATCTTCTAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGGA 154228
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||| ||||| ||| |||| || ||| | | || | || || | || ||| ||
Sbjct 154227 ATACCTTCCTTGTC-TTGAATTTTGGTCTTAACATTATCAATAGTATCAGAGGACTCAAC 154169
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|||| || | ||||| || || | || |||||||| |||||||||
Sbjct 154168 TTCAAGAGTAATGGTCTTACCAGTGAGGGTCTTTACGAAGATTTGCATA 154120
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | ||||||||||| ||||| || ||||||||||| || |||
Sbjct 154575 CCACCACGGAGACGGAGAACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCGGAA 154516
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || | || ||||| || ||||||||| |||| || | ||| || || |||||
Sbjct 154515 AGAGTACGACCATCCTCGAGTTGCTTACCAGCAAAGATAAGTCTTTGTTGGTCTGGAGGA 154456
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| || || ||||| || | || || ||| | | || | || || | || ||| ||
Sbjct 154455 ATACCCTCCTTGTC-TTGGATCTTAGTCTTAACATTATCAATAGTATCAGAGGACTCGAC 154397
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|| | ||| | ||||| || ||||| || || || || |||||||||
Sbjct 154396 TTCGAGGGTGATGGTCTTTCCAGTCAAGGTCTTGACAAAGATTTGCATA 154348
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496063975196800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |