Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2 154 1e-32 >seq2 Length=4956242 Score = 154 bits (170), Expect = 1e-32 Identities = 476/727 (65%), Gaps = 16/727 (2%) Strand=Plus/Minus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 |||||||| ||| ||||| || ||||||||||| || || || || ||| || ||| Sbjct 3220310 TTTTGATAGTCAGACACTCTCTTCTCAAAGAAGTTGGTCTTGCCAGACAATGAGATGTTT 3220251 Query 13641 TCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGT 13700 ||||| |||||||| || || | | || | || ||| ||| || | || | Sbjct 3220250 TCCATGAAATCAAAGGGGTTGGTAGCATTATATACCTTACTGTTACCAAGGGAAAGTAAT 3220191 Query 13701 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 13760 ||||| ||||||| ||||||||| ||||| |||| | | |||||| || | || Sbjct 3220190 AATCTGTCAGCAACAAACTCAATGTATTGGCACATAAGCTTGGCATTCATTCCCAAAAG- 3220132 Query 13761 TTTACA-GGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819 |||| || | || || || || || ||||| ||| || || || | ||||| Sbjct 3220131 ACTACATGGCAAAGCATCAGTCAAGAACTCCTTTTCAATAATAACGGCTTCAGTGATAAT 3220072 Query 13820 AATTGTAATAA---TCTCATTA-GAAGGAGGATATTTTAGATGTTTAAAAATTAAACACG 13875 || ||||| || ||| | | || | || || |||| ||||| | Sbjct 3220071 CTTTTCAATAACAGACTTCTTAGGTCTGTTGACA----AGGTGGCCGAAAAGCAAACAAG 3220016 Query 13876 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 13935 ||||||| || | ||| ||||| | || | ||||||||| || || | || | Sbjct 3220015 CAAAATCGGTGTGCATGCCTTCATCACGCGAGATCAATTCGTTTGAGAACGTCAGACCAG 3219956 Query 13936 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTC 13995 |||| | ||| || || || ||||| || || |||||||| || || ||||| || | Sbjct 3219955 GCATGAGTCCACGCTTCTTCAACCAGAAGATACTGGCAAATGATCCAGAGAAGAAGATAC 3219896 Query 13996 CCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCC 14055 ||||||| |||||||| || | | || || |||| | | | | | | |||| Sbjct 3219895 CCTCAACGGCAGCAAAGGCAACGAGACGCTCAGCAAAAGTGGACTGATCATCAGCAATCC 3219836 Query 14056 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA 14115 || |||||| |||| || || |||||| | || | |||||||||| || | Sbjct 3219835 ATCGGAGAGCCCAGTCAGCCTTCTTCTTAATACATGGAATATTGTCAATAGCATGGAACA 3219776 Query 14116 AATATTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTC 14173 || | | ||| |||| | |||| || || || ||||||||||| || | || Sbjct 3219775 AAAAGTTAGCCTCCTTAGCATCCTTG--ATATAAGTGTCAATAAGTAATGAGTAGGTCTC 3219718 Query 14174 AGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTG 14233 | || ||||| ||||| || || ||||| ||||| || | || || | ||| Sbjct 3219717 TGCATGGATGTTCTCCATCATAATTTGGAAACCGTAAAAACACTTTGCCTCGGGAATTTG 3219658 Query 14234 TACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAA 14292 ||||| | || | |||||||| |||| || || || || |||||||| ||| |||| Sbjct 3219657 AACTTCACCAG-AGAATCTTTCAACCAAGTTCTCGTTGACGATACCATCTGAAGCAGCAA 3219599 Query 14293 AAAATGC 14299 | ||||| Sbjct 3219598 AGAATGC 3219592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727976013600