Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2 154 1e-32 >seq2 Length=4956242 Score = 154 bits (170), Expect = 1e-32 Identities = 475/727 (65%), Gaps = 16/727 (2%) Strand=Plus/Minus Query 13369 TTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTT 13428 |||||||| ||| ||||| || ||||| ||||| || || || || ||| || ||| Sbjct 3220310 TTTTGATAGTCAGACACTCTCTTCTCAAAGAAGTTGGTCTTGCCAGACAATGAGATGTTT 3220251 Query 13429 TCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAAT 13488 ||||| ||||| || || || || | || | || ||| ||| || | |||| Sbjct 3220250 TCCATGAAATCAAAGGGGTTGGTAGCATTATATACCTTACTGTTACCAAGGGAAAGTAAT 3220191 Query 13489 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 13548 ||||| ||||||| ||||||||| ||||| |||| | | |||||| || | || Sbjct 3220190 AATCTGTCAGCAACAAACTCAATGTATTGGCACATAAGCTTGGCATTCATTCCCAAAAGA 3220131 Query 13549 TTTACA-GGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 13607 | ||| || | || ||| || || || ||||| ||| || || || | ||||| Sbjct 3220130 CT-ACATGGCAAAGCATCAGTCAAGAACTCCTTTTCAATAATAACGGCTTCAGTGATAAT 3220072 Query 13608 AATCTTAATAATGTCATTAGAAGGAGGATATTTT----AGATGTTTAAAAATTAAACACG 13663 | | ||||| || ||| | | || || || |||| ||||| | Sbjct 3220071 CTTTTCAATAACAGACTTCTTAGG----TCTGTTGACAAGGTGGCCGAAAAGCAAACAAG 3220016 Query 13664 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 13723 ||||||| || | ||| ||||| | || | ||||||||| || || | || | Sbjct 3220015 CAAAATCGGTGTGCATGCCTTCATCACGCGAGATCAATTCGTTTGAGAACGTCAGACCAG 3219956 Query 13724 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTC 13783 |||| | ||| || || || ||||| || || || |||||||| || ||||| || | Sbjct 3219955 GCATGAGTCCACGCTTCTTCAACCAGAAGATACTGGCAAATGATCCAGAGAAGAAGATAC 3219896 Query 13784 CCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCC 13843 ||||||| |||||||| || | || || || |||| | | | | | | |||| Sbjct 3219895 CCTCAACGGCAGCAAAGGCAACGAGACGCTCAGCAAAAGTGGACTGATCATCAGCAATCC 3219836 Query 13844 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATA 13903 || |||||| |||| || || |||||| | || | || || |||| ||| | Sbjct 3219835 ATCGGAGAGCCCAGTCAGCCTTCTTCTTAATACATGGAATATTGTCAATAGCATGGAACA 3219776 Query 13904 AATGTTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTC 13961 || | ||| |||| | ||||| || | || ||||||||||| || | || Sbjct 3219775 AAAAGTTAGCCTCCTTAGCATCCTTGATAT--AAGTGTCAATAAGTAATGAGTAGGTCTC 3219718 Query 13962 AGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTG 14021 | || ||||| || || || || ||||| |||||||| | || || | ||| Sbjct 3219717 TGCATGGATGTTCTCCATCATAATTTGGAAACCGTAAAAACACTTTGCCTCGGGAATTTG 3219658 Query 14022 TACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAA 14080 || || | || | |||||||| ||||||| || || || |||||||| ||| |||| Sbjct 3219657 AACTTCACCAG-AGAATCTTTCAACCAAGTTCTCGTTGACGATACCATCTGAAGCAGCAA 3219599 Query 14081 AAAATGC 14087 | ||||| Sbjct 3219598 AGAATGC 3219592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478588776070560