Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq3 100 3e-16 seq2 89.7 5e-13 >seq3 Length=2773601 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || || | || ||||| ||||| ||||||||||| | Sbjct 154347 CCACCACGAAGACGAAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAC 154288 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||| ||||||||| | || || | ||| || || ||||| Sbjct 154287 AAGGTTCTGCCATCTTCTAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGGA 154228 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGC-TGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| | | |||| || ||| | | || | || || | || || || Sbjct 154227 ATACCTTCCTTGTC-TTGAATTTTGGTCTTAACATTATCAATAGTATCAGAGGACTCAAC 154169 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| ||| | ||||| || || | || |||||||| ||||||||| Sbjct 154168 TTCAAGAGTAATGGTCTTACCAGTGAGGGTCTTTACGAAGATTTGCATA 154120 >seq2 Length=4956242 Score = 89.7 bits (98), Expect = 5e-13 Identities = 237/350 (68%), Gaps = 18/350 (5%) Strand=Plus/Plus Query 50500 ATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAGAC 50559 ||||| || || ||||| ||||| ||||| ||||| || ||||| |||||||| || Sbjct 3219952 ATGCCTGGTCTGACGTTCTCAAACGAATTGATCTCGCGTGATGAAGGCATGCACACCGAT 3220011 Query 50560 TTTGCGTGTTTGTACTACAATACGCGCGTAAATGAAAAATTATCATACGAAA-CAATTTT 50618 ||||| |||||| | | || || || || | | || ||| | || | Sbjct 3220012 TTTGCTTGTTTG-----CTTTTCG-GCCACCTTGTCAACAGACC-TAAGAAGTCTGTTAT 3220064 Query 50619 GGACATGTT---CAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACC 50675 || | | | || |||||||| || ||||| ||||| || || || ||||| || Sbjct 3220065 TGAAAAGATTATCACTGAAGCCGTTATTATTGAAAAGGAGTTCTTGACTGATGCTTTGCC 3220124 Query 50676 C-GTGGCATTGTTGGGCATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAG 50734 || | || ||||| ||||| || | | |||||| | ||||||||||||||||| | Sbjct 3220125 ATGTAGTCTT-TTGGGAATGAATGCCAAGCTTATGTGCCAATACATTGAGTTTGTTGCTG 3220183 Query 50735 ACAGATTGTTGTTGCAGCTGGGACAACCGAAA--TACTATAATGCACGTAACCCCTTTCC 50792 ||||||| || | || || ||| | || || |||||||| ||||||||| Sbjct 3220184 ACAGATTATTACTTTCCCTTGG-TAACAGTAAGGTA-TATAATGCTACCAACCCCTTTGA 3220241 Query 50793 GTTTATGAATAACATATCGTTGGAGGGCAAAACAAACTTTTTCGA-AAGA 50841 || ||| | ||||| || ||| ||||| || ||||| || || |||| Sbjct 3220242 TTTCATGGAAAACATCTCATTGTCTGGCAAGACCAACTTCTTTGAGAAGA 3220291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507014374649280