Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2 183 4e-41 seq1 95.1 2e-14 >seq2 Length=4956242 Score = 183 bits (202), Expect = 4e-41 Identities = 402/593 (68%), Gaps = 12/593 (2%) Strand=Plus/Plus Query 124986 AGATTTACCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAG 125045 |||||| ||||| || || | ||| ||||| |||||| |||||||||| ||||| || Sbjct 3219430 AGATTTGTTCTGTTCCCTATTAAGTACCATGAGATTTGGCAAATGTACAAGCAGGCTGAG 3219489 Query 125046 GCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACT 125105 || || || ||||| | ||||| | ||| | |||||| | || |||||| Sbjct 3219490 GCTTCTTTCTGGACTGCTGAAGAAATTGATTTAGGAAAGGACATCAGTGACTGGGAGCAC 3219549 Query 125106 CGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTT--TGGCCTTCTTTGCCGGCT 125163 ||| | | ||| |||| ||| ||| |||| | | | | | || |||||||| | | Sbjct 3219550 CGTCTTAATGATGATGAG--AGATTTTTTATCTCTCGTGTCCTTGCATTCTTTGCTGCTT 3219607 Query 125164 CCGATGGAATCGTCAACGACAA-TCTGTTGACACGATTCTCTCAAG-AGTTGACCATTCC 125221 | ||||| ||||||||||| || | ||||| | |||||||| | |||| | ||||| Sbjct 3219608 CAGATGGTATCGTCAACGAGAACTTGGTTGA-AAGATTCTCTGGTGAAGTTCA-AATTCC 3219665 Query 125222 AGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTA 125281 |||| ||| |||||||| |||||||| ||||| |||||| | || | || | || Sbjct 3219666 CGAGGCAAAGTGTTTTTACGGTTTCCAAATTATGATGGAGAACATCCATGCAGAGACCTA 3219725 Query 125282 CTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAAC--ACATGCTCTTTAAC 125339 ||| ||| ||||||| || || ||| || | | | | || | | || | Sbjct 3219726 CTCATTACTTATTGACACTTATATCAAGGAT--GCTAAGGAGGCTAACTTTTTGTTCCAT 3219783 Query 125340 GCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGAT 125399 || || |||| | || | ||| || |||||| | |||| | || ||||| | | Sbjct 3219784 GCTATTGACAATATTCCATGTATTAAGAAGAAGGCTGACTGGGCTCTCCGATGGATTGCT 3219843 Query 125400 GACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTC 125459 || || |||| | | || || | || || || || || ||||| ||||| |||||| Sbjct 3219844 GATGATCAGTCCACTTTTGCTGAGCGTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTC 3219903 Query 125460 TTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTG 125519 || || || ||||| ||||| ||| | |||||||| ||||||||||| || ||| Sbjct 3219904 TTCTCTGGATCATTTGCCAGTATCTTCTGGTTGAAGAAGCGTGGACTCATGCCTGGTCTG 3219963 Query 125520 ACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 ||| | ||||| || || || || || || ||| | ||| || ||||| Sbjct 3219964 ACGTTCTCAAACGAATTGATCTCGCGTGATGAAGGCATGCACACCGATTTTGC 3220016 Score = 123 bits (136), Expect = 4e-23 Identities = 311/471 (66%), Gaps = 4/471 (1%) Strand=Plus/Plus Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 |||| ||| ||||| || ||||| || ||||| ||| | ||| | |||||||| |||| Sbjct 3633020 GATATGTTGATCAGGGTGGTAATAAGCGACCAGGTGCTTTTGCCATGTACTTGGAGCCTT 3633079 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 |||| | || |||||||| || || ||| |||| || || || ||||| | | Sbjct 3633080 GGCATGATGATGTTTTTGAATTCATTGAGCTGCGAAAGAATCACGGTAAGGAAGAAGTCC 3633139 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAA-- 97042 | ||||| || ||||| | || || ||| | || || |||||||||||| | ||||| Sbjct 3633140 GTGCCAGAGATTTGTTCTTGGCTCTATGGATTCCTGACTTGTTCATGAAGAGAGTCAAGG 3633199 Query 97043 CGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTG 97102 | | | || | |||| | ||||| ||| | || || || || ||| || Sbjct 3633200 CTAACGAGG--ATTGGACTTTGATGTGTCCCAATGAGTGTCCTGGCTTGGATGATGTCTA 3633257 Query 97103 GGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACG 97162 || || ||||| | || || | |||||| | || || || | ||| Sbjct 3633258 TGGTGACGAGTTCGTTGCTCTTTATGAGAAGTACGAGAAGGAAGGTAGAGGCAGAAGAAC 3633317 Query 97163 AGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCC 97222 || | || | | | |||||| | || || | ||||| |||||||| | || Sbjct 3633318 CATCAAGGCCCAAAAGCTGTGGTATGCTATTCTCGAAGCTCAAACTGAGACTGGTAACCC 3633377 Query 97223 GTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCAT 97282 | ||| || || |||||| | ||| |||| || ||||||| ||||||| || || Sbjct 3633378 ATTCATGCTTTATAAGGATGCTTGTAATAGCAAGAGTAACCAACAAAACTTGGGTACTAT 3633437 Query 97283 CAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGA 97333 |||| |||||| ||||| |||||||| |||||| | ||||| || || Sbjct 3633438 CAAGTCCTCCAACTTGTGCTGTGAAATTGTTGAGTACTCTTCTCCTGAAGA 3633488 >seq1 Length=5930846 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 96810 AACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGT---ACAATGCAATGTCACGA 96866 || |||| | ||| ||| | ||||| ||||| ||| | | ||||| | || || | Sbjct 4967271 AATGGCAGCTCCAATGGAATTGTGCCGATGCTAAGAGTTTTTAACAATAC--TGCCAGG- 4967215 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 || || ||||| || || ||| | ||||| ||| | || | ||||||||||||||| Sbjct 4967214 TATGTAGATCAGGGTGGTAACAAAAGACCAGGTGCTTTTGCTATTTACTTGGAACCTTGG 4967155 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||| || | || || ||| | ||| | || ||||| ||| ||||| | || Sbjct 4967154 CACAGTGATATATTAGAGTTTTTAGAGTTACGAAAAAATCACGGCAAAGAAGAATTAAGA 4967095 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAA 97033 || | |||||||||||||| || ||| | || |||||||||||||| Sbjct 4967094 GCTCGAGACTTGTTTTATGCTCTTTGGATCCCTGATTTGTTCATGAA 4967048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059162947040