Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq2 183 4e-41
seq1 95.1 2e-14
>seq2
Length=4956242
Score = 183 bits (202), Expect = 4e-41
Identities = 402/593 (68%), Gaps = 12/593 (2%)
Strand=Plus/Plus
Query 124986 AGATTTACCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAG 125045
|||||| ||||| || || | ||| ||||| |||||| |||||||||| ||||| ||
Sbjct 3219430 AGATTTGTTCTGTTCCCTATTAAGTACCATGAGATTTGGCAAATGTACAAGCAGGCTGAG 3219489
Query 125046 GCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACT 125105
|| || || ||||| | ||||| | ||| | |||||| | || ||||||
Sbjct 3219490 GCTTCTTTCTGGACTGCTGAAGAAATTGATTTAGGAAAGGACATCAGTGACTGGGAGCAC 3219549
Query 125106 CGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTT--TGGCCTTCTTTGCCGGCT 125163
||| | | ||| |||| ||| ||| |||| | | | | | || |||||||| | |
Sbjct 3219550 CGTCTTAATGATGATGAG--AGATTTTTTATCTCTCGTGTCCTTGCATTCTTTGCTGCTT 3219607
Query 125164 CCGATGGAATCGTCAACGACAA-TCTGTTGACACGATTCTCTCAAG-AGTTGACCATTCC 125221
| ||||| ||||||||||| || | ||||| | |||||||| | |||| | |||||
Sbjct 3219608 CAGATGGTATCGTCAACGAGAACTTGGTTGA-AAGATTCTCTGGTGAAGTTCA-AATTCC 3219665
Query 125222 AGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTA 125281
|||| ||| |||||||| |||||||| ||||| |||||| | || | || | ||
Sbjct 3219666 CGAGGCAAAGTGTTTTTACGGTTTCCAAATTATGATGGAGAACATCCATGCAGAGACCTA 3219725
Query 125282 CTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAAC--ACATGCTCTTTAAC 125339
||| ||| ||||||| || || ||| || | | | | || | | || |
Sbjct 3219726 CTCATTACTTATTGACACTTATATCAAGGAT--GCTAAGGAGGCTAACTTTTTGTTCCAT 3219783
Query 125340 GCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGAT 125399
|| || |||| | || | ||| || |||||| | |||| | || ||||| | |
Sbjct 3219784 GCTATTGACAATATTCCATGTATTAAGAAGAAGGCTGACTGGGCTCTCCGATGGATTGCT 3219843
Query 125400 GACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTC 125459
|| || |||| | | || || | || || || || || ||||| ||||| ||||||
Sbjct 3219844 GATGATCAGTCCACTTTTGCTGAGCGTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTC 3219903
Query 125460 TTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTG 125519
|| || || ||||| ||||| ||| | |||||||| ||||||||||| || |||
Sbjct 3219904 TTCTCTGGATCATTTGCCAGTATCTTCTGGTTGAAGAAGCGTGGACTCATGCCTGGTCTG 3219963
Query 125520 ACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572
||| | ||||| || || || || || || ||| | ||| || |||||
Sbjct 3219964 ACGTTCTCAAACGAATTGATCTCGCGTGATGAAGGCATGCACACCGATTTTGC 3220016
Score = 123 bits (136), Expect = 4e-23
Identities = 311/471 (66%), Gaps = 4/471 (1%)
Strand=Plus/Plus
Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924
|||| ||| ||||| || ||||| || ||||| ||| | ||| | |||||||| ||||
Sbjct 3633020 GATATGTTGATCAGGGTGGTAATAAGCGACCAGGTGCTTTTGCCATGTACTTGGAGCCTT 3633079
Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984
|||| | || |||||||| || || ||| |||| || || || ||||| | |
Sbjct 3633080 GGCATGATGATGTTTTTGAATTCATTGAGCTGCGAAAGAATCACGGTAAGGAAGAAGTCC 3633139
Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAA-- 97042
| ||||| || ||||| | || || ||| | || || |||||||||||| | |||||
Sbjct 3633140 GTGCCAGAGATTTGTTCTTGGCTCTATGGATTCCTGACTTGTTCATGAAGAGAGTCAAGG 3633199
Query 97043 CGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTG 97102
| | | || | |||| | ||||| ||| | || || || || ||| ||
Sbjct 3633200 CTAACGAGG--ATTGGACTTTGATGTGTCCCAATGAGTGTCCTGGCTTGGATGATGTCTA 3633257
Query 97103 GGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACG 97162
|| || ||||| | || || | |||||| | || || || | |||
Sbjct 3633258 TGGTGACGAGTTCGTTGCTCTTTATGAGAAGTACGAGAAGGAAGGTAGAGGCAGAAGAAC 3633317
Query 97163 AGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCC 97222
|| | || | | | |||||| | || || | ||||| |||||||| | ||
Sbjct 3633318 CATCAAGGCCCAAAAGCTGTGGTATGCTATTCTCGAAGCTCAAACTGAGACTGGTAACCC 3633377
Query 97223 GTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCAT 97282
| ||| || || |||||| | ||| |||| || ||||||| ||||||| || ||
Sbjct 3633378 ATTCATGCTTTATAAGGATGCTTGTAATAGCAAGAGTAACCAACAAAACTTGGGTACTAT 3633437
Query 97283 CAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGA 97333
|||| |||||| ||||| |||||||| |||||| | ||||| || ||
Sbjct 3633438 CAAGTCCTCCAACTTGTGCTGTGAAATTGTTGAGTACTCTTCTCCTGAAGA 3633488
>seq1
Length=5930846
Score = 95.1 bits (104), Expect = 2e-14
Identities = 159/227 (70%), Gaps = 6/227 (3%)
Strand=Plus/Minus
Query 96810 AACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGT---ACAATGCAATGTCACGA 96866
|| |||| | ||| ||| | ||||| ||||| ||| | | ||||| | || || |
Sbjct 4967271 AATGGCAGCTCCAATGGAATTGTGCCGATGCTAAGAGTTTTTAACAATAC--TGCCAGG- 4967215
Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926
|| || ||||| || || ||| | ||||| ||| | || | |||||||||||||||
Sbjct 4967214 TATGTAGATCAGGGTGGTAACAAAAGACCAGGTGCTTTTGCTATTTACTTGGAACCTTGG 4967155
Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986
||| || | || || ||| | ||| | || ||||| ||| ||||| | ||
Sbjct 4967154 CACAGTGATATATTAGAGTTTTTAGAGTTACGAAAAAATCACGGCAAAGAAGAATTAAGA 4967095
Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAA 97033
|| | |||||||||||||| || ||| | || ||||||||||||||
Sbjct 4967094 GCTCGAGACTTGTTTTATGCTCTTTGGATCCCTGATTTGTTCATGAA 4967048
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741059162947040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |