Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq3 111 1e-19 seq2 82.4 6e-11 >seq3 Length=2773601 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || || || ||||| || ||||| ||||||||||| | |||| | ||||| Sbjct 154330 AACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGACAAGGTTCTGCCATCTTC 154271 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 |||||| || ||||| | || | | ||||||||| ||||| ||||| ||||| Sbjct 154270 TAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTG 154211 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||||| |||| ||| | || || ||||| || || || | |||||||| || Sbjct 154210 AATTTTGGTCTTAACATTATCAATAGTATCAGAGGACTCAACTTCAAGAGTAATGGTCTT 154151 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| || || || ||||| || ||||||||| Sbjct 154150 ACCAGTGAGGGTCTTTACGAAGATTTGCATA 154120 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || ||||| || || || ||||| || |||||||| | |||| | ||||| Sbjct 154102 AACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCAGACAAGGTTCTGCCATCTTC 154043 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 |||||| || ||||| | || | | ||||||||| ||||| ||||| ||||| Sbjct 154042 TAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTG 153983 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| ||| |||| ||| | || || ||||| || || || | || ||||| || Sbjct 153982 AATCTTGGTCTTGACATTGTCGATAGTATCAGAGGACTCAACCTCAAGAGTGATGGTCTT 153923 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || || ||||| || |||||||| Sbjct 153922 ACCAGTGAGGGTCTTTACGAAGATTTGCAT 153893 >seq2 Length=4956242 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || || || || ||||| |||||||| || || | | | || || | ||| Sbjct 2345924 TGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCCTCAAGTTGC 2345983 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | |||||||||||||| || |||||||| || ||||| || ||| Sbjct 2345984 TTACCAGCAAAGATCAAACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTTG 2346043 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 |||| ||| | || || || ||| | || || || | ||| || || ||||| || Sbjct 2346044 GTCTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCAAGGGTGATAGTCTTACCGGTA 2346103 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||||||||| Sbjct 2346104 AGGGTCTTGACGAAAATTTGCAT 2346126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362179182343764