Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq3 111 1e-19
seq2 82.4 6e-11
>seq3
Length=2773601
Score = 111 bits (122), Expect = 1e-19
Identities = 151/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| || || || ||||| || ||||| ||||||||||| | |||| | |||||
Sbjct 154330 AACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGACAAGGTTCTGCCATCTTC 154271
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
|||||| || ||||| | || | | ||||||||| ||||| ||||| |||||
Sbjct 154270 TAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTG 154211
Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
||||||| |||| ||| | || || ||||| || || || | |||||||| ||
Sbjct 154210 AATTTTGGTCTTAACATTATCAATAGTATCAGAGGACTCAACTTCAAGAGTAATGGTCTT 154151
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
||| || || || ||||| || |||||||||
Sbjct 154150 ACCAGTGAGGGTCTTTACGAAGATTTGCATA 154120
Score = 95.1 bits (104), Expect = 9e-15
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| || ||||| || || || ||||| || |||||||| | |||| | |||||
Sbjct 154102 AACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCAGACAAGGTTCTGCCATCTTC 154043
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
|||||| || ||||| | || | | ||||||||| ||||| ||||| |||||
Sbjct 154042 TAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTG 153983
Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
||| ||| |||| ||| | || || ||||| || || || | || ||||| ||
Sbjct 153982 AATCTTGGTCTTGACATTGTCGATAGTATCAGAGGACTCAACCTCAAGAGTGATGGTCTT 153923
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
||| || || || ||||| || ||||||||
Sbjct 153922 ACCAGTGAGGGTCTTTACGAAGATTTGCAT 153893
>seq2
Length=4956242
Score = 82.4 bits (90), Expect = 6e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220
|| || || || || ||||| |||||||| || || | | | || || | |||
Sbjct 2345924 TGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCCTCAAGTTGC 2345983
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| ||||| | |||||||||||||| || |||||||| || ||||| || |||
Sbjct 2345984 TTACCAGCAAAGATCAAACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTTG 2346043
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
|||| ||| | || || || ||| | || || || | ||| || || ||||| ||
Sbjct 2346044 GTCTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCAAGGGTGATAGTCTTACCGGTA 2346103
Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363
|| || || || |||||||||||
Sbjct 2346104 AGGGTCTTGACGAAAATTTGCAT 2346126
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362179182343764
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |