Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq2 132 4e-26
>seq2
Length=4956242
Score = 132 bits (146), Expect = 4e-26
Identities = 478/734 (65%), Gaps = 24/734 (3%)
Strand=Plus/Minus
Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919
|||||||| || ||||| || ||||| ||||| || || || || || || |||
Sbjct 3220310 TTTTGATAGTCAGACACTCTCTTCTCAAAGAAGTTGGTCTTGCCAGACAATGAGATGTTT 3220251
Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACAC---CCTAATTCTAGT 12976
||||| ||||| || || || | | || || ||| |||| || | |||
Sbjct 3220250 TCCATGAAATCAAAGGGGTTGGTAG--CATTA-TATACCTTACTGTTACCAAGGGAAAGT 3220194
Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036
|| |||||||||||||||||||| ||||| || ||| | | |||||||| |
Sbjct 3220193 AATAATCTGTCAGCAACAAACTCAATGTATTGGCACATAAGCTTGGCATTCATTCCCAA- 3220135
Query 13037 AATTTTACA-GGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAAC 13095
|| |||| |||| ||| || || || || | ||||| ||| ||| ||||| | |
Sbjct 3220134 AAGACTACATGGCAAAGCATCAGTCAAGAACTCCTTTTCAATAATAACGGCTTCAGTGAT 3220075
Query 13096 TATGTCTCTTATTACGTTCT-CTAATGGAGGATTTGATA-GATGCTTAAACATCATACAT 13153
|| | | || || || || | | | |||| | | || || | || |||
Sbjct 3220074 AATCTTTTCAATAACAGACTTCTTAGGTCTG--TTGACAAGGTGGCCGAAAAGCAAACAA 3220017
Query 13154 GCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCC 13213
|||||||| ||||| |||||||| | || | |||||||| || || |||||
Sbjct 3220016 GCAAAATCGGTGTGCATGCCTTCATCACGCGAGATCAATTCGTTTGAGAACGTCAGACCA 3219957
Query 13214 GGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATT 13273
||||| || || || || || | ||| || ||| ||||| || || || || || ||
Sbjct 3219956 GGCATGAGTCCACGCTTCTTCAACCAGAAGATACTGGCAAATGATCCAGAGAAGAAGATA 3219897
Query 13274 CCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGT--ACT-ATTTTTACTCTCT 13330
|| ||||| || ||||| || | | | ||| || | || ||| || | | |
Sbjct 3219896 CCCTCAACGGCAGCAAAGGCAACGAGACGCTCAGCAAAAGTGGACTGATCATCAG---CA 3219840
Query 13331 ATCCACTTTCTG---GCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCG 13387
||||| || | ||||||| || || | |||| || ||||| || || ||
Sbjct 3219839 ATCCA---TCGGAGAGCCCAGTCAGCCTTCTTCTTAATACATGGAATATTGTCAATAGCA 3219783
Query 13388 TTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATAC 13447
| || ||| | || |||||| || |||||||| || || | ||| ||
Sbjct 3219782 TGGAACAAAAAGTTAGCCTCCTTAGCATCCTTGATATAAGTGTCAATAAGTAATGAGTAG 3219723
Query 13448 ATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGAT 13507
| |||| ||| || || |||||| ||||||||||| |||||||| | ||||| |
Sbjct 3219722 GTCTCTGCATGGATGTTCTCCATCATAATTTGGAAACCGTAAAAACACTTTGCCTCGGGA 3219663
Query 13508 ACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCA 13567
| |||||||| | |||||||| | ||||| ||||| || || || || ||||
Sbjct 3219662 ATTTGAACTTCACCAGAGAATCTTTCAACCAAGTTCTCGTTGACGATACCATCTGAAGCA 3219603
Query 13568 GCaaaaaaaGCAAG 13581
||||| || |||||
Sbjct 3219602 GCAAAGAATGCAAG 3219589
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430982378989608
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |