Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2 132 4e-26 >seq2 Length=4956242 Score = 132 bits (146), Expect = 4e-26 Identities = 478/734 (65%), Gaps = 24/734 (3%) Strand=Plus/Minus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 |||||||| || ||||| || ||||| ||||| || || || || || || ||| Sbjct 3220310 TTTTGATAGTCAGACACTCTCTTCTCAAAGAAGTTGGTCTTGCCAGACAATGAGATGTTT 3220251 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACAC---CCTAATTCTAGT 12976 ||||| ||||| || || || | | || || ||| |||| || | ||| Sbjct 3220250 TCCATGAAATCAAAGGGGTTGGTAG--CATTA-TATACCTTACTGTTACCAAGGGAAAGT 3220194 Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036 || |||||||||||||||||||| ||||| || ||| | | |||||||| | Sbjct 3220193 AATAATCTGTCAGCAACAAACTCAATGTATTGGCACATAAGCTTGGCATTCATTCCCAA- 3220135 Query 13037 AATTTTACA-GGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAAC 13095 || |||| |||| ||| || || || || | ||||| ||| ||| ||||| | | Sbjct 3220134 AAGACTACATGGCAAAGCATCAGTCAAGAACTCCTTTTCAATAATAACGGCTTCAGTGAT 3220075 Query 13096 TATGTCTCTTATTACGTTCT-CTAATGGAGGATTTGATA-GATGCTTAAACATCATACAT 13153 || | | || || || || | | | |||| | | || || | || ||| Sbjct 3220074 AATCTTTTCAATAACAGACTTCTTAGGTCTG--TTGACAAGGTGGCCGAAAAGCAAACAA 3220017 Query 13154 GCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCC 13213 |||||||| ||||| |||||||| | || | |||||||| || || ||||| Sbjct 3220016 GCAAAATCGGTGTGCATGCCTTCATCACGCGAGATCAATTCGTTTGAGAACGTCAGACCA 3219957 Query 13214 GGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATT 13273 ||||| || || || || || | ||| || ||| ||||| || || || || || || Sbjct 3219956 GGCATGAGTCCACGCTTCTTCAACCAGAAGATACTGGCAAATGATCCAGAGAAGAAGATA 3219897 Query 13274 CCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGT--ACT-ATTTTTACTCTCT 13330 || ||||| || ||||| || | | | ||| || | || ||| || | | | Sbjct 3219896 CCCTCAACGGCAGCAAAGGCAACGAGACGCTCAGCAAAAGTGGACTGATCATCAG---CA 3219840 Query 13331 ATCCACTTTCTG---GCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCG 13387 ||||| || | ||||||| || || | |||| || ||||| || || || Sbjct 3219839 ATCCA---TCGGAGAGCCCAGTCAGCCTTCTTCTTAATACATGGAATATTGTCAATAGCA 3219783 Query 13388 TTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATAC 13447 | || ||| | || |||||| || |||||||| || || | ||| || Sbjct 3219782 TGGAACAAAAAGTTAGCCTCCTTAGCATCCTTGATATAAGTGTCAATAAGTAATGAGTAG 3219723 Query 13448 ATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGAT 13507 | |||| ||| || || |||||| ||||||||||| |||||||| | ||||| | Sbjct 3219722 GTCTCTGCATGGATGTTCTCCATCATAATTTGGAAACCGTAAAAACACTTTGCCTCGGGA 3219663 Query 13508 ACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCA 13567 | |||||||| | |||||||| | ||||| ||||| || || || || |||| Sbjct 3219662 ATTTGAACTTCACCAGAGAATCTTTCAACCAAGTTCTCGTTGACGATACCATCTGAAGCA 3219603 Query 13568 GCaaaaaaaGCAAG 13581 ||||| || ||||| Sbjct 3219602 GCAAAGAATGCAAG 3219589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430982378989608