Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3 147 5e-30 seq2 138 3e-27 >seq3 Length=2773601 Score = 147 bits (162), Expect = 5e-30 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || |||||||| || ||||| | ||||| || ||||||| ||| || ||| Sbjct 154089 GTAGATTCCTTTTGAATATTGTAATCAGACAAGGTTCTGCCATCTTCTAATTGCTTACCA 154030 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || || ||||| || ||||| || ||||| || || |||||||| | || Sbjct 154029 GCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATCTTGGTCTTG 153970 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||||| | || ||||| || || || ||||||||||| || || Sbjct 153969 ACATTGTCGATAGTATCAGAGGACTCAACCTCAAGAGTGATGGTCTTACCAGTGAGGGTC 153910 Query 104543 TTTACAAATATCTGCATTTTG 104563 ||||| || || |||||| || Sbjct 153909 TTTACGAAGATTTGCATTGTG 153889 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || ||||| || || ||||| | ||||| || ||||||| ||| || ||| Sbjct 154317 GTGGATTCCTTTTGAATGTTGTAATCAGACAAGGTTCTGCCATCTTCTAATTGCTTACCA 154258 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || || ||||| || ||||| || ||||| || || ||||| || | || Sbjct 154257 GCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATTTTGGTCTTA 154198 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||||| | || || || || ||||| ||||||||||| || || Sbjct 154197 ACATTATCAATAGTATCAGAGGACTCAACTTCAAGAGTAATGGTCTTACCAGTGAGGGTC 154138 Query 104543 TTTACAAATATCTGCAT 104559 ||||| || || ||||| Sbjct 154137 TTTACGAAGATTTGCAT 154121 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || || || |||||||| || ||||| | |||||||| | ||| || ||| Sbjct 155001 GTAGATTCCTTTTGGATGTTATAGTCGGAGAGAGTACGGCCGTCTTCCAATTGCTTACCA 154942 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| | | |||||| || ||||| || ||||| || || |||||||| | || Sbjct 154941 GCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATCTTAGTCTTG 154882 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||||| | || || || || ||||||||||||||||| | || Sbjct 154881 ACGTTGTCGATAGTATCAGAGGACTCGACTTCGAGAGTAATAGTCTTACCAGTCAAAGTC 154822 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 154821 TTGACGAAGATTTGCAT 154805 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || ||||| | ||||||||| || || || || Sbjct 155229 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCGTCTTCGAGCTGCTTACCG 155170 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || || ||||| || || || || || || || || || ||||| | || Sbjct 155169 GCAAAGATGAGTCTTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGTCTTG 155110 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || ||||| || || |||||||||||||| || || Sbjct 155109 ACATTATCAATGGTGTCCGAAGACTCGACCTCGAGCGTGATAGTCTTACCAGTGAGGGTC 155050 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 155049 TTGACGAAGATTTGCAT 155033 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || ||||| || ||||| || ||||| | || || || ||||| || ||| Sbjct 154773 GTGGATTCCTTTTGAATGTTGTAGTCGGAGAGAGTACGGCCATCCTCGAGTTGCTTACCA 154714 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| | | |||||| || ||||| || || || || || |||||||| | || Sbjct 154713 GCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCCTCCTTGTCTTGAATCTTGGTCTTG 154654 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||||| | ||| || || || ||||||||||||||||| | || Sbjct 154653 ACGTTATCAATAGTATCAGAGGATTCAACTTCGAGAGTAATAGTCTTACCAGTCAAAGTC 154594 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 154593 TTGACGAAGATTTGCAT 154577 Score = 111 bits (122), Expect = 4e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | | || || || || | || || || || ||||| || |||||| Sbjct 1977701 ATACCACCTCTCAAACGGAGGACAAGGTGGAGAGTCGACTCCTTTTGAATGTTGTAGTCA 1977642 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || ||||| || || || ||||| || || || || || || | |||||||| || Sbjct 1977641 GAAAGGGTTCTGCCATCCTCGAGTTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGG 1977582 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| || || || || ||||| | || || || || | ||| ||| || || Sbjct 1977581 GGAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCAATGGTGTCGGAAGACTCG 1977522 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 ||||| || || || |||||||||||||| || || || || Sbjct 1977521 ACCTCGAGGGTGATGGTCTTACCAGTAAGGGTCTTGACGAA 1977481 >seq2 Length=4956242 Score = 138 bits (152), Expect = 3e-27 Identities = 398/605 (66%), Gaps = 12/605 (2%) Strand=Plus/Plus Query 268691 AACCCAGATAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAA 268750 ||||| | |||||||| | || || || || | ||| || ||| |||||||| Sbjct 3219421 AACCCTAACAGATTTGTTCTGTTCCCTATTAAGTACCATGAGATTTGGCAAATGTACAAG 3219480 Query 268751 CAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGAT 268810 ||||| | |||||||| ||||||| |||||| | ||| | | ||| | | || Sbjct 3219481 CAGGCTGAGGCTTCTTTCTGGACTGCTGAAGAAATTGATTTAGGAAAGGACATCAGTGAC 3219540 Query 268811 TGGAAAAA---TTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTT 268867 ||| | | | | || || || ||| ||||| ||| | | ||||| || ||| Sbjct 3219541 TGGGAGCACCGTCTTAATGATGATGAGAGATTTTTTATCTCTCGTGTCCTTGCATTCTTT 3219600 Query 268868 GCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAG 268927 || | | ||||||||||| ||||| || | || || | |||| | || || || Sbjct 3219601 GCTGCTTCAGATGGTATCGTCAACGAGAACTTGGTTGAAAGATTCTCTGGTGAAGTTCAA 3219660 Query 268928 ATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAG 268987 ||||| || || | ||||||||||| ||||| || || || || || ||| ||||| Sbjct 3219661 ATTCCCGAGGCAAAGTGTTTTTACGGTTTCCAAATTATGATGGAGAACATCCATGCAGAG 3219720 Query 268988 ATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTT 269047 | ||| || | || || |||||||| | ||| || || | || | | | Sbjct 3219721 ACCTACTCATTACTTATTGACACTTATATCAAGGATGCTAAGGAG--GCTAACTTTTTGT 3219778 Query 269048 TC--TTCTAT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGG 269104 || | |||| || || ||| ||| | | || || |||| |||||||| |||| Sbjct 3219779 TCCATGCTATTGACAA-TATTCCATGTATTAAGAAGAAGGCTGACTGGGCTCTCCGATGG 3219837 Query 269105 ATAAACGAT-AGCGCGCC--TTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGT 269161 || ||| | | || || | || | | ||||| ||||| || || || ||| Sbjct 3219838 ATTGCTGATGATCAGTCCACTTTTGCTGAGCGTCTCGTTGCCTTTGCTGCCGTTGAGGGT 3219897 Query 269162 ATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCA 269221 || ||||| || || || |||||| |||||| ||||||||||| | || || ||||| Sbjct 3219898 ATCTTCTTCTCTGGATCATTTGCCAGTATCTTCTGGTTGAAGAAGCGTGGACTCATGCCT 3219957 Query 269222 GGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCT 269281 || | || ||||| ||||||||||| | || ||||| | ||| ||| || ||| Sbjct 3219958 GGTCTGACGTTCTCAAACGAATTGATCTCGCGTGATGAAGGCATGCACACCGATTTTGCT 3220017 Query 269282 TGTTT 269286 ||||| Sbjct 3220018 TGTTT 3220022 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || || || || || |||||||| || || | ||| || || ||||| || ||| Sbjct 2345930 GTAGACTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCCTCAAGTTGCTTACCA 2345989 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | |||||||| || || ||||| || || || || ||||| | || Sbjct 2345990 GCAAAGATCAAACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTTGGTCTTG 2346049 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || ||| || || ||||| || || ||||||||||| ||||| || Sbjct 2346050 ACATTGTCGATAGTGTCGGAAGACTCAACCTCAAGGGTGATAGTCTTACCGGTAAGGGTC 2346109 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 2346110 TTGACGAAAATTTGCAT 2346126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398340990832