Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq2 105 8e-18 >seq2 Length=4956242 Score = 105 bits (116), Expect = 8e-18 Identities = 291/437 (67%), Gaps = 32/437 (7%) Strand=Plus/Minus Query 164516 TAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCA 164575 |||| || | |||||| | |||||||||||| ||||||||||| || || || | Sbjct 2172120 TAAAGGGTCTATTATTATACGGACCTCCTGGTACAGGTAAAACATTGATTGCCCGTCAAA 2172061 Query 164576 TTGCTCAAGCTTTTAAA---TCGCGACCCGTTAAAATTGTTAATGGTCCTGAATTATTGA 164632 | | ||| | || || | || || || ||||| |||||||| ||| | | | Sbjct 2172060 TAGGA-AAGATGTTGAACTCTGTTGAGCCC--AAGATTGTAAATGGTCCCGAAATGCTCA 2172004 Query 164633 ACAAATATGTAGGTG--AGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGA 164690 ||| || |||||| ||| |||| ||| || | || ||||| |||| ||||| | Sbjct 2172003 GCAAGTACGTAGGTAGCAGT--GAAGAGAATATTCGTAACCTGTTTAAGGACGCTGAGGC 2171946 Query 164691 AGA--ACAAA-AGAAAGCAG--GTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAG 164745 || | ||| |||||| || | | || |||| || ||||| |||| || ||| Sbjct 2171945 CGAGTATAAAGAGAAAGGAGACGAATCGC-----AATTGCACATTATTATTTTCGACGAG 2171891 Query 164746 ATAGATGCTCTTTGCAAAAAA---------CGTGGTGATAATATTATTCATGATG-CAGT 164795 | |||||| | | ||| || ||||||||| || | | || || || | Sbjct 2171890 TTGGATGCTGTGTTCAAGCAAAGAGGTTCTCGTGGTGATGGTACTGGTGTTGGTGACAAT 2171831 Query 164796 G--GTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATT 164853 | || ||||||||| | ||||||| |||||||| ||| | ||||| ||||| || Sbjct 2171830 GTTGTCAATCAGTTGTTAGCTAAAATGGATGGTGTTGAACAGCTTAATAACATTTTGGTT 2171771 Query 164854 GTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTA 164913 | |||||||||||| ||| ||| | ||||| || || | || |||||||| || Sbjct 2171770 ATTGGTATGACCAACAGACGAGATCTTATTGACTCGGCATTGCTTCGTCCTGGTCGTTTC 2171711 Query 164914 GAATTGAAAATAGAAAT 164930 ||| | || | ||||| Sbjct 2171710 GAAGTTCAATTGGAAAT 2171694 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 19358 CCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATGATT 19417 ||| |||| |||||||||||||| || | | ||||||||| || |||| | | Sbjct 2109964 CCTCAAATCGGTGATAAGTTTGCATCGCGTCACGGTCAAAAAGGTACTATTGGTGTTACA 2109905 Query 19418 TATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATTAAC 19477 || |||| ||||||||||| |||||| || ||||| ||||| ||||| ||||| ||| Sbjct 2109904 TACCGTCGTGAAGATATGCCATTTACTGCTGAAGGTATTGTGCCAGATCTCATTATCAAC 2109845 Query 19478 CCACATGCTTTTCCAAGTCGAATGAC 19503 ||||| || ||||| ||| ||||| Sbjct 2109844 CCACACGCCATTCCATCTCGTATGAC 2109819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595871970206400