Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_005902.1
Length=186250
Score E
Sequences producing significant alignments: (Bits) Value
seq2 105 8e-18
>seq2
Length=4956242
Score = 105 bits (116), Expect = 8e-18
Identities = 291/437 (67%), Gaps = 32/437 (7%)
Strand=Plus/Minus
Query 164516 TAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCA 164575
|||| || | |||||| | |||||||||||| ||||||||||| || || || |
Sbjct 2172120 TAAAGGGTCTATTATTATACGGACCTCCTGGTACAGGTAAAACATTGATTGCCCGTCAAA 2172061
Query 164576 TTGCTCAAGCTTTTAAA---TCGCGACCCGTTAAAATTGTTAATGGTCCTGAATTATTGA 164632
| | ||| | || || | || || || ||||| |||||||| ||| | | |
Sbjct 2172060 TAGGA-AAGATGTTGAACTCTGTTGAGCCC--AAGATTGTAAATGGTCCCGAAATGCTCA 2172004
Query 164633 ACAAATATGTAGGTG--AGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGA 164690
||| || |||||| ||| |||| ||| || | || ||||| |||| ||||| |
Sbjct 2172003 GCAAGTACGTAGGTAGCAGT--GAAGAGAATATTCGTAACCTGTTTAAGGACGCTGAGGC 2171946
Query 164691 AGA--ACAAA-AGAAAGCAG--GTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAG 164745
|| | ||| |||||| || | | || |||| || ||||| |||| || |||
Sbjct 2171945 CGAGTATAAAGAGAAAGGAGACGAATCGC-----AATTGCACATTATTATTTTCGACGAG 2171891
Query 164746 ATAGATGCTCTTTGCAAAAAA---------CGTGGTGATAATATTATTCATGATG-CAGT 164795
| |||||| | | ||| || ||||||||| || | | || || || |
Sbjct 2171890 TTGGATGCTGTGTTCAAGCAAAGAGGTTCTCGTGGTGATGGTACTGGTGTTGGTGACAAT 2171831
Query 164796 G--GTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATT 164853
| || ||||||||| | ||||||| |||||||| ||| | ||||| ||||| ||
Sbjct 2171830 GTTGTCAATCAGTTGTTAGCTAAAATGGATGGTGTTGAACAGCTTAATAACATTTTGGTT 2171771
Query 164854 GTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTA 164913
| |||||||||||| ||| ||| | ||||| || || | || |||||||| ||
Sbjct 2171770 ATTGGTATGACCAACAGACGAGATCTTATTGACTCGGCATTGCTTCGTCCTGGTCGTTTC 2171711
Query 164914 GAATTGAAAATAGAAAT 164930
||| | || | |||||
Sbjct 2171710 GAAGTTCAATTGGAAAT 2171694
Score = 102 bits (112), Expect = 1e-16
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 19358 CCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATGATT 19417
||| |||| |||||||||||||| || | | ||||||||| || |||| | |
Sbjct 2109964 CCTCAAATCGGTGATAAGTTTGCATCGCGTCACGGTCAAAAAGGTACTATTGGTGTTACA 2109905
Query 19418 TATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATTAAC 19477
|| |||| ||||||||||| |||||| || ||||| ||||| ||||| ||||| |||
Sbjct 2109904 TACCGTCGTGAAGATATGCCATTTACTGCTGAAGGTATTGTGCCAGATCTCATTATCAAC 2109845
Query 19478 CCACATGCTTTTCCAAGTCGAATGAC 19503
||||| || ||||| ||| |||||
Sbjct 2109844 CCACACGCCATTCCATCTCGTATGAC 2109819
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595871970206400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |