Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq3 125 6e-24
>seq3
Length=2773601
Score = 125 bits (138), Expect = 6e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|||||||| | ||||||||||||||| | || ||||| || || || ||| ||
Sbjct 154101 ACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCAGACAAGGTTCTGCCATCTTCT 154042
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
| || || || |||| || | |||||| || ||||||||||||||||| ||||| | |
Sbjct 154041 AATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGA 153982
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| || | |||||| | ||| ||| |||| | || || |||| |||||||| ||
Sbjct 153981 ATCTTGGTCTTGACATTGTCGATAGTATCAGAGGACTCAACCTCAAGAGTGATGGTCTTA 153922
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| || || || || ||||| |||||
Sbjct 153921 CCAGTGAGGGTCTTTACGAAGATTTGCAT 153893
Score = 114 bits (126), Expect = 1e-20
Identities = 153/211 (73%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856
|| ||||| | ||||||||||||||| | ||| || ||| | || || || |||||
Sbjct 154557 ACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCGG--AAAGAGTACGACCATCCT 154500
Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916
| || || || || ||||||| | |||||| || |||||||||||||| || ||||| |
Sbjct 154499 CGAGTTGCTTACCAGCAAAGATAAGTCTTTGTTGGTCTGGAGGAATACCCTCCTTGTCTT 154440
Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976
|| || | ||| || | | ||| |||| | ||||| || | |||||||| |
Sbjct 154439 GGATCTTAGTCTTAACATTATCAATAGTATCAGAGGACTCGACTTCGAGGGTGATGGTCT 154380
Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||||| | || || |||||||| |||||
Sbjct 154379 TTCCAGTCAAGGTCTTGACAAAGATTTGCAT 154349
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|||||||| | ||| ||||||||||| | ||| ||||| || || || ||| ||
Sbjct 154329 ACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGACAAGGTTCTGCCATCTTCT 154270
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
| || || || |||| || | |||||| || ||||||||||||||||| ||||| | |
Sbjct 154269 AATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGA 154210
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
||||| | ||| || | | ||| |||| | || || |||| || ||||| ||
Sbjct 154209 ATTTTGGTCTTAACATTATCAATAGTATCAGAGGACTCAACTTCAAGAGTAATGGTCTTA 154150
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| || || || || ||||| |||||
Sbjct 154149 CCAGTGAGGGTCTTTACGAAGATTTGCAT 154121
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|||||||| | ||||||||||||||| | |||||| ||| | ||| | || |||
Sbjct 155013 ACCAAGTGGAGAGTAGATTCCTTTTGGATGTTATAGTCGGAGAGAGTACGGCCGTCTTCC 154954
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
| || || || | || || || | || || ||||||||||||||||| ||||| | |
Sbjct 154953 AATTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGA 154894
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| || | ||||||| | ||| ||| |||| | ||||| || | || || || ||
Sbjct 154893 ATCTTAGTCTTGACGTTGTCGATAGTATCAGAGGACTCGACTTCGAGAGTAATAGTCTTA 154834
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| | ||| || || ||||| |||||
Sbjct 154833 CCAGTCAAAGTCTTGACGAAGATTTGCAT 154805
Score = 89.7 bits (98), Expect = 5e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|| ||||| | ||| ||||||||||| | ||| || ||| | ||| | ||||||
Sbjct 154785 ACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAGAGAGTACGGCCATCCTCG 154726
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
|| || || || | || || || | || || |||||||||||||| || ||||| | |
Sbjct 154725 AGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCCTCCTTGTCTTGA 154666
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| || | ||||||| | | ||| |||| | || || || | || || || ||
Sbjct 154665 ATCTTGGTCTTGACGTTATCAATAGTATCAGAGGATTCAACTTCGAGAGTAATAGTCTTA 154606
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| | ||| || || ||||| |||||
Sbjct 154605 CCAGTCAAAGTCTTGACGAAGATTTGCAT 154577
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448291177585440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |