Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3 179 6e-41 >seq3 Length=2773601 Score = 179 bits (198), Expect = 6e-41 Identities = 202/268 (75%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | ||| |||||| || ||||||||||| || |||||||| ||||| Sbjct 1597191 GCCAAGCGTCACAGAAAGAT-TCTTCGTGACAACATCCAAGGTATTACCAAGCCTGCTAT 1597133 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||| ||||||||||| ||||||||| |||| | | |||| ||||||| Sbjct 1597132 CCGTCGTCTGGCCCGTCGTGGTGGTGTCAAGCGTATCTCAGCTCTTATCTACGAAGAGAC 1597073 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||| |||||| || | || |||| |||||| || ||||||||| Sbjct 1597072 CCGTGGAGTCCTCAAGTCATTCCTCGAGTCGGTCATCCGTGATGCCGTCACCTATACCGA 1597013 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| |||||||| | || ||||||| || | || | ||||| Sbjct 1597012 ACACGCCAAGAGAAAGACCGTCACCTCTCTCGACGTCGTCTACGCTCTCAAGAGACAAGG 1596953 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | || ||||| || ||||| Sbjct 1596952 CCGTACTTTGTACGGTTTCGGTGGTTAA 1596925 Score = 174 bits (192), Expect = 2e-39 Identities = 201/268 (75%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | ||| |||||| || ||||| ||||| ||||||||||| || || Sbjct 103982 GCCAAGCGTCACAGAAAGAT-TCTTCGTGACAACATTCAAGGTATCACCAAGCCTGCCAT 104040 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||| | | ||||| ||||||||| |||||| | |||| ||||||| Sbjct 104041 CCGTCGTCTGGCAAGAAGAGGTGGTGTCAAGCGTATCTCTGCCCTCATCTACGAAGAGAC 104100 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| |||||| | |||| |||| |||||| || |||||| || Sbjct 104101 CCGTGGAGTTCTCAAGTCGTTCCTCGAATCCGTCATCCGTGATGCAGTCACCTATACTGA 104160 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||||| | ||| ||||||| || | || | ||||| Sbjct 104161 GCACGCCAAGAGAAAGACCGTCACCTCTCTCGATGTCGTCTACGCCCTCAAGAGACAAGG 104220 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| |||| ||||| || ||||| Sbjct 104221 CCGTACCCTTTACGGTTTCGGTGGTTAA 104248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075196342772