Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq2 129 6e-25
>seq2
Length=4956242
Score = 129 bits (142), Expect = 6e-25
Identities = 347/528 (66%), Gaps = 2/528 (0%)
Strand=Plus/Minus
Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244
|||||||| ||| ||||| || || || || || ||||| || |||||| || |
Sbjct 3220310 TTTTGATAGTCAGACACTCTCTTCTCAAAGAAGTTGGTCTTGCCAGACAATGAGATGTTT 3220251
Query 21245 TCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAAT 21304
||||| |||||||| || || || ||| ||| ||| | ||| || ||||
Sbjct 3220250 TCCATGAAATCAAAGGGGTTGGTAGCATTATATACCTTACTGTTACCAAGGGAAAGTAAT 3220191
Query 21305 AATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAAT 21364
||||| || || ||||| || || ||||| ||||| | | |||||| || | ||
Sbjct 3220190 AATCTGTCAGCAACAAACTCAATGTATTGGCACATAAGCTTGGCATTCATTCCCAA-AAG 3220132
Query 21365 TTTACA-GGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTAT 21423
|||| || | ||| | ||||| || ||||| ||| ||||||||| || ||
Sbjct 3220131 ACTACATGGCAAAGCATCAGTCAAGAACTCCTTTTCAATAATAACGGCTTCAGTGATAAT 3220072
Query 21424 ATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAA 21483
||| || ||| | |||| | | | || || | |||||| |||||
Sbjct 3220071 CTTTTCAATAACAGACTTCTTAGGTCTGTTGACAAGGTGGCCGAAAAGCAAACAAGCAAA 3220012
Query 21484 ATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCAT 21543
||| |||| |||||||| | || ||||| || || || || | ||| |||||
Sbjct 3220011 ATCGGTGTGCATGCCTTCATCACGCGAGATCAATTCGTTTGAGAACGTCAGACCAGGCAT 3219952
Query 21544 TAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTC 21603
| ||| | ||| || ||||| || || ||||||| ||| || ||||| || |||||
Sbjct 3219951 GAGTCCACGCTTCTTCAACCAGAAGATACTGGCAAATGATCCAGAGAAGAAGATACCCTC 3219892
Query 21604 AACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTT 21663
|||||||||||| ||||| | || ||| | | || || | | ||| ||||||
Sbjct 3219891 AACGGCAGCAAAGGCAACGAGACGCTCAGCAAAAGTGGACTGATCATCAGCAATCCATCG 3219832
Query 21664 TTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGC 21711
||||| | ||||| | |||||||| ||| | ||||||||
Sbjct 3219831 GAGAGCCCAGTCAGCCTTCTTCTTAATACATGGAATATTGTCAATAGC 3219784
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531900773404960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |