Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2 129 6e-25 >seq2 Length=4956242 Score = 129 bits (142), Expect = 6e-25 Identities = 347/528 (66%), Gaps = 2/528 (0%) Strand=Plus/Minus Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244 |||||||| ||| ||||| || || || || || ||||| || |||||| || | Sbjct 3220310 TTTTGATAGTCAGACACTCTCTTCTCAAAGAAGTTGGTCTTGCCAGACAATGAGATGTTT 3220251 Query 21245 TCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAAT 21304 ||||| |||||||| || || || ||| ||| ||| | ||| || |||| Sbjct 3220250 TCCATGAAATCAAAGGGGTTGGTAGCATTATATACCTTACTGTTACCAAGGGAAAGTAAT 3220191 Query 21305 AATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAAT 21364 ||||| || || ||||| || || ||||| ||||| | | |||||| || | || Sbjct 3220190 AATCTGTCAGCAACAAACTCAATGTATTGGCACATAAGCTTGGCATTCATTCCCAA-AAG 3220132 Query 21365 TTTACA-GGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTAT 21423 |||| || | ||| | ||||| || ||||| ||| ||||||||| || || Sbjct 3220131 ACTACATGGCAAAGCATCAGTCAAGAACTCCTTTTCAATAATAACGGCTTCAGTGATAAT 3220072 Query 21424 ATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAA 21483 ||| || ||| | |||| | | | || || | |||||| ||||| Sbjct 3220071 CTTTTCAATAACAGACTTCTTAGGTCTGTTGACAAGGTGGCCGAAAAGCAAACAAGCAAA 3220012 Query 21484 ATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCAT 21543 ||| |||| |||||||| | || ||||| || || || || | ||| ||||| Sbjct 3220011 ATCGGTGTGCATGCCTTCATCACGCGAGATCAATTCGTTTGAGAACGTCAGACCAGGCAT 3219952 Query 21544 TAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTC 21603 | ||| | ||| || ||||| || || ||||||| ||| || ||||| || ||||| Sbjct 3219951 GAGTCCACGCTTCTTCAACCAGAAGATACTGGCAAATGATCCAGAGAAGAAGATACCCTC 3219892 Query 21604 AACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTT 21663 |||||||||||| ||||| | || ||| | | || || | | ||| |||||| Sbjct 3219891 AACGGCAGCAAAGGCAACGAGACGCTCAGCAAAAGTGGACTGATCATCAGCAATCCATCG 3219832 Query 21664 TTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGC 21711 ||||| | ||||| | |||||||| ||| | |||||||| Sbjct 3219831 GAGAGCCCAGTCAGCCTTCTTCTTAATACATGGAATATTGTCAATAGC 3219784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531900773404960