Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 3e-15 >seq3 Length=2773601 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || || || |||||||| | |||||| ||||| | || || Sbjct 154349 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACCATCACCCTCGAAGTCGAGTCCTCT 154408 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | || || ||||| ||||| || || || ||||| || ||| Sbjct 154409 GATACTATTGATAATGTTAAGACTAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAA 154468 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||||| || | | || || |||||||| |||| | | | | |||||| ||| Sbjct 154469 CAAAGACTTATCTTTGCTGGTAAGCAACTCGAGGATGGTCGTACTCTTTCCGACTACAAC 154528 Query 26949 ATTCAAAAAGAATCTACT 26966 |||||||| ||||||||| Sbjct 154529 ATTCAAAAGGAATCTACT 154546 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 26793 ACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAA 26852 ||||| || | |||||| |||| | || || ||||||||| || | ||||| Sbjct 1977496 ACTGGTAAGACCATCACCCTCGAGGTCGAGTCTTCCGACACCATTGACAACGTCAAGACC 1977555 Query 26853 AAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAA 26912 ||||| ||||| || || || || || ||||||||| | || || | || ||| || Sbjct 1977556 AAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAACAACGTCTTATCTTCGCCGGTAAG 1977615 Query 26913 CAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCAT 26972 |||||||| |||| |||| | | ||||| ||||||||||| || || ||| |||| Sbjct 1977616 CAACTCGAGGATGGCAGAACCCTTTCTGACTACAACATTCAAAAGGAGTCGACTCTCCAC 1977675 Query 26973 CTGGTCCT 26980 || ||||| Sbjct 1977676 CTTGTCCT 1977683 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 || ||||||| | || ||||| || | ||||| || | ||||| | || | || || Sbjct 153889 CACAATGCAAATCTTCGTAAAGACCCTCACTGGTAAGACCATCACTCTTGAGGTTGAGTC 153948 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 || || ||||| | ||||| |||||| ||||| ||||| || ||||| || Sbjct 153949 CTCTGATACTATCGACAATGTCAAGACCAAGATTCAAGACAAGGAAGGTATTCCTCCAGA 154008 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 ||||||||||| |||| | || || ||| | ||||||| |||| | | || || Sbjct 154009 CCAACAAAGACTTATTTTTGCTGGTAAGCAATTAGAAGATGGCAGAACCTTGTCTGATTA 154068 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || |||||||| ||||||||| | || |||| || Sbjct 154069 CAATATTCAAAAGGAATCTACTCTTCACTTGGTTCT 154104 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || || ||||| || | || || ||||| | || || Sbjct 154805 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACTATTACTCTCGAAGTCGAGTCCTCT 154864 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || ||||| | ||||| |||||| ||||| ||||| || ||||| || ||| Sbjct 154865 GATACTATCGACAACGTCAAGACTAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 154924 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | |||| || || || ||| | ||||| | | | || |||||||||| Sbjct 154925 CAGCGTTTGATTTTCGCTGGTAAGCAATTGGAAGACGGCCGTACTCTCTCCGACTATAAC 154984 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| ||||||||| |||| ||||||| Sbjct 154985 ATCCAAAAGGAATCTACTCTCCACTTGGTCCT 155016 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || || ||||| || | || || ||||| | ||||| Sbjct 154577 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACTATTACTCTCGAAGTTGAATCCTCT 154636 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | ||||| |||||| ||||| || || || ||||| || ||| Sbjct 154637 GATACTATTGATAACGTCAAGACCAAGATTCAAGACAAGGAGGGTATTCCTCCAGACCAA 154696 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | |||| || || || |||||||| |||| | | || |||||| ||| Sbjct 154697 CAGCGTTTGATTTTCGCTGGTAAGCAACTCGAGGATGGCCGTACTCTCTCCGACTACAAC 154756 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||||| ||||| ||| |||| | ||||| Sbjct 154757 ATTCAAAAGGAATCCACTCTCCACTTAGTCCT 154788 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || ||||| || | ||||| || | || || | ||| | || || Sbjct 154121 ATGCAAATCTTCGTAAAGACCCTCACTGGTAAGACCATTACTCTTGAAGTTGAGTCCTCT 154180 Query 26829 GACACCATCGAGCAAGTCAA-ACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || || || || | || || || ||| ||| ||||| ||||| || ||||| || || Sbjct 154181 GATACTATTGATAATGTTAAGACCAAA-ATTCAAGACAAGGAAGGTATTCCTCCAGACCA 154239 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||||||||| |||| | || || ||| | ||||||| |||| | | || || || Sbjct 154240 ACAAAGACTTATTTTTGCTGGTAAGCAATTAGAAGATGGCAGAACCTTGTCTGATTACAA 154299 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||||||| ||||| ||| |||| |||| || Sbjct 154300 CATTCAAAAGGAATCCACTCTCCACTTGGTTCT 154332 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || | ||||| || | ||||| |||| | || || Sbjct 155033 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACTATCACGCTCGAGGTCGAGTCTTCG 155092 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | ||||| ||||| ||||| || || || || || || ||| Sbjct 155093 GACACCATTGATAATGTCAAGACCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAA 155152 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||||||||| | | ||| || || |||||||| | | | | || |||||| ||| Sbjct 155153 CAAAGACTCATCTTTGCCGGTAAGCAGCTCGAAGACGGTCGTACTCTCTCCGACTACAAC 155212 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAA 26998 || || || || || || |||| ||||||| | ||| | || || || Sbjct 155213 ATCCAGAAGGAGTCGACCCTCCACTTGGTCCTCCGTCTTCGTGGCGGTAA 155262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478662376066880