Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2 242 1e-58 >seq2 Length=4956242 Score = 242 bits (268), Expect = 1e-58 Identities = 1150/1797 (64%), Gaps = 50/1797 (3%) Strand=Plus/Plus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGT-ATCAATGGTGATATTGTTGA 363449 ||||| | ||||| |||| | ||| ||| | ||| || |||||| | || | || Sbjct 3632605 TTCGGTTTCAAGACTTTGGAAAGATCGTACTTG-CTCAAGATTAATGGTAAAATCGCCGA 3632663 Query 363450 ACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGC 363509 | || || || ||| | ||| | || ||| ||||||| ||| | | ||| | Sbjct 3632664 GAGACCCCAACACATGATCATGAGAGTAGCTGTTGGTATTCATGGTTCTGATATCACCAA 3632723 Query 363510 CGCGATTGAAACATATAAGCTTCTAAGTGCTCGT--GTATTC-ACGCACGCCACGCCAAC 363566 || ||||||||||| || || | | || ||| ||||| || || ||| | || || Sbjct 3632724 GGCCATTGAAACATACAA-CTAC-ATGT-CTCAAAAGTATTTTACACATGCCTCCCCCAC 3632780 Query 363567 AATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAA 363626 ||||||||||||| |||| || || || ||||| |||||||| | | || ||||| Sbjct 3632781 TCTGTACAATGCTGGTACTCCCAAGCCTCAAATGTCCTCTTGCTTCTTGGTTAACATGAA 3632840 Query 363627 GGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAA 363686 ||||||||| || || || || | || || | |||| |||||| | ||||| ||| Sbjct 3632841 GGACGATTCTATAGATGGCATTTACGATACTTTGAAGACTTGTGCCTTGATTTCAAAGTC 3632900 Query 363687 TGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCG 363745 ||| || || |||||| | | || ||| | ||||| || | | |||||| | Sbjct 3632901 TGCTGGTGGTATTGGTTTGAGTGTTCATAATATCCGTGCTACTGG-CTCCTACATTGCTG 3632959 Query 363746 GCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGA 363805 | || || ||| || || | ||||||||| | | || || | |||||||| | Sbjct 3632960 GAACTAACGGTACCTCAAACGGTATTGTTCCCATGTTGAGAGTTTTCAATAATACTGCTA 3633019 Query 363806 GGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTC 363865 | || || || |||||||| ||||| ||| || ||||| ||||| | |||||| Sbjct 3633020 GATATGTTGATCAGGGTGGTAATAAGCGACCAGGTGCTTTTGCCATGTACTTGGAGCCTT 3633079 Query 363866 ATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA-CACGGGAAAAGAGGAATTG 363924 |||| ||| ||||||| || ||||||| || || || ||||| || || ||| | Sbjct 3633080 GGCATGATGATGTTTTTGAATTCATTGAGCTGCGAAAGAATCACGGTAAG-GAAGAAGTC 3633138 Query 363925 CGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG 363984 ||||| | ||| |||||| || || ||| || ||||| || |||||| | || || Sbjct 3633139 CGTGCCAGAGATTTGTTCTTGGCTCTATGGATTCCTGACTTGTTCATGAAGAGAGTCAAG 3633198 Query 363985 GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGG 364044 || || ||||| | | | || || | || ||||| || | ||||| | Sbjct 3633199 GCTAACGAGGATTGGACTTTGATGTGTCCCAATGAGTGTCCTGGCTTGGATGATGTCTAT 3633258 Query 364045 GGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAA-AGGCTCGTAAGAC 364103 |||||||| | |||||||| || || ||||| || ||| || | |||| | | || Sbjct 3633259 GGTGACGAGTTCGTTGCTCTTTATGAGAAGTACGAGAAGGAAGGTAGAGGCA-GAAGAAC 3633317 Query 364104 AATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACC 364163 || || || ||||| |||| ||| || | || | || | |||||| || | || Sbjct 3633318 CATCAAGGCCCAAAAGCTGTGGTATGCTATTCTCGAAGCTCAAACTGAGACTGGTAACCC 3633377 Query 364164 CTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAAT 364223 | ||| | || || ||| | || || ||||| ||||| || || | ||||| || Sbjct 3633378 ATTCATGCTTTATAAGGATGCTTGTAATAGCAAGAGTAACCAACAAAACTTGGGTACTAT 3633437 Query 364224 TCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGT 364283 || |||| | || || ||| |||| ||| | |||| || || |||||| Sbjct 3633438 CAAGTCCTCCAACTTGTGCTGTGAAATTGTTGAGTACTCTTCTCCTGAAGAAGTTGCCGT 3633497 Query 364284 ATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAA---GATG--GTACTTTTG-- 364336 ||||| | || ||| | | || || || || || || |||| | | |||| Sbjct 3633498 CTGTAATTTGGCATCGTTGTCTCTACCTGCTTTCGTTGAAAGTGATGAGGAAGGTTTGTG 3633557 Query 364337 -----ACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGT 364391 || | | ||| | || || || | || ||| | || || || | | | Sbjct 3633558 GTATAACTTTAACAAACTTCACGAGGTTGCCAAGGTTGTCACTAGAAA-CTTGA-ATGTT 3633615 Query 364392 --TATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGC 364449 ||| |||| || | ||| || | ||||| || | ||| | ||||| | Sbjct 3633616 ATTATTGACAGAAACTTTTACCCTGTCAAGGAAGCTGAAAGAAGCAATTTCCGTCACAGA 3633675 Query 364450 CCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTT 364509 || |||| ||||||| | || || | || || | |||||| ||| || |||| Sbjct 3633676 CCCATTGCTCTTGGTATTCAAGGTTTGGCCGATGCCTTTATGGCTCTCCGTTTGCCATTC 3633735 Query 364510 GATTCGCCTGACGCTCGTGTTCTAAATAAGG---AGATCTTTGAAACAATGTATTTTGCC 364566 || || ||||| || | | | | || | | || ||| || || ||| ||| Sbjct 3633736 GACTCCCCTGAGGC-CAAG--CAATTGAACGTTCAAATTGCTGAGACCATCTATCATGCT 3633792 Query 364567 GCAAT-GACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGG 364625 || | || | ||||| ||| | || || | ||| || ||||| | || Sbjct 3633793 GCTGTTGAAT-CTTCGGTTGAACTCGCCGAATTGTACGGACCCTATGAGACTTACCAAGG 3633851 Query 364626 GTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCG 364685 || ||| || |||| || || |||||| | ||| || |||| || ||| | Sbjct 3633852 TTCTCCTGCCTCAAAGGGTCTTTTGCAATTTGATTTGTGGGATATCACTCCCACTGATCT 3633911 Query 364686 ATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCT--- 364742 ||| |||||| | | || || | ||||||||| | |||||||| Sbjct 3633912 CTGGGACTGGGCTGCTCTCAAGAAGAAGATGGCTAAGCATGGTCTGAGAAACTCCCTTCT 3633971 Query 364743 CGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTT 364802 |||| || || ||||| || || || || |||| || || || |||||||| || || Sbjct 3633972 CGTT---GCTCCTATGCCTACTGCCTCAACATCACAAATTCTTGGTAACAACGAATGTTT 3634028 Query 364803 CGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGT 364862 |||||| | ||| ||| | || || || | |||||| |||| ||||| | | || Sbjct 3634029 CGAACCTTACACATCCAACATCTACTCTCGTAGAGTTCTTGCCGGTGAATTCCAAATTGT 3634088 Query 364863 TAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAA 364922 |||| | | | | ||||| ||| ||| || |||||||| || | ||||||||| Sbjct 3634089 TAATCAATGGTTGTTGAAGGACCTTGTCGATTTGGGACTGTGGGGAGAGAACATGAAGAA 3634148 Query 364923 CTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAA 364982 || || ||| ||||||||| | ||||| ||||| | || || ||| | || Sbjct 3634149 TAGAATTATTGCCAACAATGGTTCTATTCAGAATATTCCTAACATCCCTGAGGATATCAA 3634208 Query 364983 GCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGA 365042 | | | || || || || ||||| |||| | || ||||||||||||| || || Sbjct 3634209 GGCATTGTATAAGACTGTTTGGGAGCTTTCTCAGAAGACAATCATTGATATGGCTGCTGA 3634268 Query 365043 TCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCA---GCCAAC 365099 ||| | ||| |||||| ||| || || || || ||| | | ||| ||| || || Sbjct 3634269 TCGTGCTGCCTTTATCGATCAAAGTCAATCTTTGAACATTTACAT---TCAAGCTCCTAC 3634325 Query 365100 CTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | ||| | || |||||||||||||| ||| || |||||||||||||| Sbjct 3634326 TATGGGCAAATTGACTAGTATGCATTTCTACGGCTGGCAAAAGGGTCTTAAGACAGG 3634382 Score = 131 bits (144), Expect = 4e-25 Identities = 499/766 (65%), Gaps = 28/766 (4%) Strand=Plus/Plus Query 22216 CTAGCATTCTTTGCTACCGCAGACGGTATAGTTTTTGAGAATCTAGT-GACTAATTTTGC 22274 || |||||||||||| | |||| ||||| || ||||| | || || ||| | | Sbjct 3219589 CTTGCATTCTTTGCTGCTTCAGATGGTATCGTCAACGAGAACTTGGTTGAAAGATTCT-C 3219647 Query 22275 ATCTGAAATTCAATACCCAGAGGCCAGATGTTTCTATGGTGTGCAAATGATGATTGAAAA 22334 |||| ||||| || ||||| | ||||| || ||| | ||||| ||||| || || Sbjct 3219648 TGGTGAAGTTCAAATTCCCGAGGCAAAGTGTTTTTACGGTTTCCAAATTATGATGGAGAA 3219707 Query 22335 TGTTCACGCGGAAACATATTCTATGATGCTACAGTCACTCGTA-----GAAGATAAAGAC 22389 | || || || || || || | | || | |||| || || | ||| || Sbjct 3219708 CATCCATGCAGAGACCTACTCATTACT--TATTGACACTTATATCAAGGATGCTAAGGAG 3219765 Query 22390 GAACAACGAAACTTATTCCGCGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGAT 22449 | ||| || |||| || ||| || |||| || |||||||| ||||| || Sbjct 3219766 GCT-AACTTT--TTGTTCCATGCTATTGACAATATTCCATGTATTAAGAAGAAGGCTGAC 3219822 Query 22450 TGGGCGCTGAAATGGATGAACAATGAAC-GTTCA--TTCGCGGAACGTCTTATTGCATTT 22506 ||||| || |||||| |||| | || || || || || ||||| |||| ||| Sbjct 3219823 TGGGCTCTCCGATGGATTGCTGATGATCAGTCCACTTTTGCTGAGCGTCTCGTTGCCTTT 3219882 Query 22507 GCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaa 22566 |||| ||||| || || ||||| |||||| ||||| ||||| ||| | || || Sbjct 3219883 GCTGCCGTTGAGGGTATCTTCTTCTCTGGATCATTTGCCAGTATCTTCTGGTTGAAGAAG 3219942 Query 22567 CGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTT 22626 |||| | | ||||| ||||| ||||| ||||| || || || || ||||| || | Sbjct 3219943 CGTGGACTCATGCCTGGTCTGACGTTCTCAAACGAATTGATCTCGCGTGATGAAGGCATG 3220002 Query 22627 CATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAAACTTCCATATGAA 22686 || ||||||||||| ||| |||| | |||| || | || | ||| | || ||| Sbjct 3220003 CACACCGATTTTGCTTGTTTGCT-TTTCGG--CCA---CCTT-GTCAACAGACCTAAGAA 3220055 Query 22687 -ACTGTACTTG---ATATTATTACAAATGCAGTTGAACTTGAACGTCTATTTATTTGC-G 22741 |||| ||| | ||||| || | || ||| ||||| | || || | | Sbjct 3220056 GTCTGTTATTGAAAAGATTATCACTGAAGCCGTTATTATTGAA-AAGGAGTTCTTGACTG 3220114 Query 22742 AGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACATATATTAAAT 22801 | || || ||| ||||| | || || |||||| | ||| | ||| ||| | | Sbjct 3220115 ATGCTTTGCCATGTAGTCTTTTGGGAATGAATGCCAAGCTTATGTGCCAATACATTGAGT 3220174 Query 22802 TTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAACGTCGTTAATC 22861 ||||||| || | ||||| |||| || ||| | ||| ||||| | || | Sbjct 3220175 TTGTTGCTGACAGATTATTACTTTCCCTTGGTAACAGTAAGGTATATAATGCTACCAACC 3220234 Query 22862 CATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAG 22921 | ||||| | |||||| || ||| | || |||||||| ||||| || || |||| Sbjct 3220235 CCTTTGATTTCATGGAAAACATCTCATTGTCTGGCAAGACCAACTTCTTTGAGAAGAGAG 3220294 Query 22922 TTGGTGAATACCAAAAAGCAGGTGTTATGGATGCATTGAATGATAG 22967 | ||| || ||||| |||||||| |||| || | |||| ||| Sbjct 3220295 TGTCTGACTATCAAAAGGCAGGTGTCATGGCTGGTTCTAATGCTAG 3220340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353533203128