Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq3 107 2e-18
seq2 100 2e-16
>seq3
Length=2773601
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | || || || || || ||||| || | ||||| ||||||||||| ||
Sbjct 154805 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACTATTACTCTCGAAGTCGAGTCCTCT 154864
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|| || ||||| | ||||| |||||| ||||| ||||| || ||||| || |||
Sbjct 154865 GATACTATCGACAACGTCAAGACTAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 154924
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||| | |||||| || || |||||| | ||||| | | | | || ||| ||||||
Sbjct 154925 CAGCGTTTGATTTTCGCTGGTAAGCAATTGGAAGACGGCCGTACTCTCTCCGACTATAAC 154984
Query 24171 ATTCAAAAAGAATCTAC 24187
|| ||||| ||||||||
Sbjct 154985 ATCCAAAAGGAATCTAC 155001
Score = 102 bits (112), Expect = 7e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||| || || || |||||||| | || ||| ||||||||||| ||
Sbjct 154349 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACCATCACCCTCGAAGTCGAGTCCTCT 154408
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|| || || || | || || ||||| ||||| || || || ||||| || |||
Sbjct 154409 GATACTATTGATAATGTTAAGACTAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAA 154468
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|| ||||| || | | || ||||||||||| |||| | | | ||| || |||
Sbjct 154469 CAAAGACTTATCTTTGCTGGTAAGCAACTCGAGGATGGTCGTACTCTTTCCGACTACAAC 154528
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199
|||||||| |||||||| |||| |||||
Sbjct 154529 ATTCAAAAGGAATCTACTCTTCACTTAGT 154557
Score = 98.7 bits (108), Expect = 9e-16
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | || ||||| || | ||||| || | ||||| | ||||| ||| ||
Sbjct 154121 ATGCAAATCTTCGTAAAGACCCTCACTGGTAAGACCATTACTCTTGAAGTTGAGTCCTCT 154180
Query 24051 GACACCATCGAGCAAGTCAA-ACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
|| || || || | || || || ||| ||| ||||| ||||| || ||||| || ||
Sbjct 154181 GATACTATTGATAATGTTAAGACCAAA-ATTCAAGACAAGGAAGGTATTCCTCCAGACCA 154239
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169
||| ||||| |||| | || |||||| | ||||||| ||||| | | ||||| ||
Sbjct 154240 ACAAAGACTTATTTTTGCTGGTAAGCAATTAGAAGATGGCAGAACCTTGTCTGATTACAA 154299
Query 24170 CATTCAAAAAGAATCTAC 24187
||||||||| ||||| ||
Sbjct 154300 CATTCAAAAGGAATCCAC 154317
Score = 98.7 bits (108), Expect = 9e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | || || || || || ||||| || | ||||| ||||||| || ||
Sbjct 154577 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACTATTACTCTCGAAGTTGAATCCTCT 154636
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|| || || || | ||||| |||||| ||||| || || || ||||| || |||
Sbjct 154637 GATACTATTGATAACGTCAAGACCAAGATTCAAGACAAGGAGGGTATTCCTCCAGACCAA 154696
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||| | |||||| || || ||||||||||| |||| | | | || ||| || |||
Sbjct 154697 CAGCGTTTGATTTTCGCTGGTAAGCAACTCGAGGATGGCCGTACTCTCTCCGACTACAAC 154756
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199
|||||||| ||||| || | || |||||
Sbjct 154757 ATTCAAAAGGAATCCACTCTCCACTTAGT 154785
Score = 87.8 bits (96), Expect = 2e-12
Identities = 123/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074
||||| || | || ||| |||| |||||| | ||||||||| || | |||||
Sbjct 1977496 ACTGGTAAGACCATCACCCTCGAGGTCGAGTCTTCCGACACCATTGACAACGTCAAGACC 1977555
Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134
||||| ||||| || || || || || |||||||| | || || | || ||| |||
Sbjct 1977556 AAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAACAACGTCTTATCTTCGCCGGTAAG 1977615
Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187
|||||||| |||| ||||| | | || || ||||||||||| || || ||
Sbjct 1977616 CAACTCGAGGATGGCAGAACCCTTTCTGACTACAACATTCAAAAGGAGTCGAC 1977668
>seq2
Length=4956242
Score = 100 bits (110), Expect = 2e-16
Identities = 466/723 (64%), Gaps = 29/723 (4%)
Strand=Plus/Minus
Query 131999 GATTGACTCTGATCGATGTAAGGTCCCCTGTCTGCGGCCATATTCAACAATACT-TTCTG 132057
|||||||| |||||||| | | | | || || ||||||| ||| || | |||||
Sbjct 3634298 GATTGACTTTGATCGATAAAGGCAGCACGATCAGCAGCCATAT-CAATGATTGTCTTCTG 3634240
Query 132058 CTTAATTTCCCAAGCGGTCTTGAAGAGCGCCTTGACGTCGTGTGGAATGTCATCGATATT 132117
|| |||||| | ||||| | | ||||||| || | || |||| | |||||
Sbjct 3634239 AGAAAGCTCCCAAACAGTCTTATACAATGCCTTGATATCCTCAGGGATGTTAGGAATATT 3634180
Query 132118 CTGTACAGATCCGTTGTTTTTGATAATTTTCATCATCA-GTTCTGTCGAGTACACGTTGC 132176
||| | ||| || ||||| |||||| | || ||| ||||| || ||| || |
Sbjct 3634179 CTGAATAGAACCATTGTTGGCAATAATTCTATTCTTCATGTTCTCTCCCC-ACA-GTCCC 3634122
Query 132177 AG-TCTACGAG----TTTATCGACGAGATGTTGATTTACTATTTGATATTCACCCGATAA 132231
| || || || || | | || | |||||| || ||||| ||||||| | |
Sbjct 3634121 AAATCGACAAGGTCCTTCAACAACCA----TTGATTAACAATTTGGAATTCACCGGCAAG 3634066
Query 132232 GACTCTTCGTACGTACAAATTACTAGTAAACGGCTCGAACGATTCGTTGTTTCCCAATAT 132291
||||| || ||| | || || | || ||||| |||||||||| || | ||
Sbjct 3634065 AACTCTACGAGAGTAGATGTTGGATGTGTAAGGTTCGAAACATTCGTTGTTACCAAGAAT 3634006
Query 132292 TTGAGCTGTCGTTGCCGTCGGCATGTAGGCAATCAATAATGAATTGCGCAGCCCGTGTAT 132351
||| | ||| | || || ||||| |||| | | || || | ||| || || |
Sbjct 3634005 TTGTGATGTTGAGGCAGTAGGCATAGGAGCAACGAGAAGGGAGTTTCTCAGACCATGCTT 3633946
Query 132352 GGCCATTTGCCGTTTAAGCTCGTCCCAGTTCCACAGATCATTCGATTGAGAGATATTCCA 132411
||||| | | || || | |||||| ||| |||||| | | ||| ||||| |||
Sbjct 3633945 AGCCATCTTCTTCTTGAGAGCAGCCCAGTCCCAGAGATCAGTGG---GAGTGATATCCCA 3633889
Query 132412 CAAATCAAACTGTAAATGACCGCTACTTGCAGGAGATCCGTTATAAGAATCGTATGCTCC 132471
||||||||| || ||| |||| | |||||||| || | |||| || || | |||
Sbjct 3633888 CAAATCAAATTGCAAAAGACCCTTTGAGGCAGGAGAACCTTGGTAAGTCTCATAGGGTCC 3633829
Query 132472 GTGTAATTTGGCAAGTTCTATGCTCTGACTC-AGGGCACCATAATAAATAGTCTCTGAGA 132530
|| |||| ||| ||||| | | || || | ||| ||| ||| || ||||| | |
Sbjct 3633828 GTACAATTCGGCGAGTTC-AACCGAAGATTCAACAGCAGCATGATAGATGGTCTCAGCAA 3633770
Query 132531 TTTTTCTATTCAATTCCCTTGCTTGTTGACTGTCGTAGGGCAAATTTAAA---ATAGCGA 132587
||| ||||||| | | || | | |||| | |||||| | | ||| |
Sbjct 3633769 TTTGAACGTTCAATTGCTTGGCCTCAGGGGAGTCGAATGGCAAACGGAGAGCCATA---A 3633713
Query 132588 ACGCATCGGCAAGTCCCTGAATGCCGATACCGATGGGTCTATGTTTAAAATTCGATACTT 132647
| |||||||| | || ||||| || | | | |||||||| || ||||| | | |||
Sbjct 3633712 AGGCATCGGCCAAACCTTGAATACCAAGAGCAATGGGTCTGTGACGGAAATT-GCTTCTT 3633654
Query 132648 GTGCGCT--AGTCAGCGGATAAAAGTTTTTGTCTATTATTTTATTGAGATTGTTAGTGAC 132705
| ||| | | || ||||||||| |||| || || ||| | || |||||||
Sbjct 3633653 -TCAGCTTCCTTGACAGGGTAAAAGTTTCTGTCAATAATAACATTCAAGTTTCTAGTGAC 3633595
Query 132706 AAC 132708
|||
Sbjct 3633594 AAC 3633592
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429935979040620
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |