Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 seq2 100 2e-16 >seq3 Length=2773601 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || || ||||| || | ||||| ||||||||||| || Sbjct 154805 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACTATTACTCTCGAAGTCGAGTCCTCT 154864 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | ||||| |||||| ||||| ||||| || ||||| || ||| Sbjct 154865 GATACTATCGACAACGTCAAGACTAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 154924 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||||| || || |||||| | ||||| | | | | || ||| |||||| Sbjct 154925 CAGCGTTTGATTTTCGCTGGTAAGCAATTGGAAGACGGCCGTACTCTCTCCGACTATAAC 154984 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||| |||||||| Sbjct 154985 ATCCAAAAGGAATCTAC 155001 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || |||||||| | || ||| ||||||||||| || Sbjct 154349 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACCATCACCCTCGAAGTCGAGTCCTCT 154408 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || || ||||| ||||| || || || ||||| || ||| Sbjct 154409 GATACTATTGATAATGTTAAGACTAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAA 154468 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||||| || | | || ||||||||||| |||| | | | ||| || ||| Sbjct 154469 CAAAGACTTATCTTTGCTGGTAAGCAACTCGAGGATGGTCGTACTCTTTCCGACTACAAC 154528 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||| |||||||| |||| ||||| Sbjct 154529 ATTCAAAAGGAATCTACTCTTCACTTAGT 154557 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || ||||| || | ||||| || | ||||| | ||||| ||| || Sbjct 154121 ATGCAAATCTTCGTAAAGACCCTCACTGGTAAGACCATTACTCTTGAAGTTGAGTCCTCT 154180 Query 24051 GACACCATCGAGCAAGTCAA-ACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | || || || ||| ||| ||||| ||||| || ||||| || || Sbjct 154181 GATACTATTGATAATGTTAAGACCAAA-ATTCAAGACAAGGAAGGTATTCCTCCAGACCA 154239 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| ||||| |||| | || |||||| | ||||||| ||||| | | ||||| || Sbjct 154240 ACAAAGACTTATTTTTGCTGGTAAGCAATTAGAAGATGGCAGAACCTTGTCTGATTACAA 154299 Query 24170 CATTCAAAAAGAATCTAC 24187 ||||||||| ||||| || Sbjct 154300 CATTCAAAAGGAATCCAC 154317 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || || ||||| || | ||||| ||||||| || || Sbjct 154577 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACTATTACTCTCGAAGTTGAATCCTCT 154636 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | ||||| |||||| ||||| || || || ||||| || ||| Sbjct 154637 GATACTATTGATAACGTCAAGACCAAGATTCAAGACAAGGAGGGTATTCCTCCAGACCAA 154696 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||||| || || ||||||||||| |||| | | | || ||| || ||| Sbjct 154697 CAGCGTTTGATTTTCGCTGGTAAGCAACTCGAGGATGGCCGTACTCTCTCCGACTACAAC 154756 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||| ||||| || | || ||||| Sbjct 154757 ATTCAAAAGGAATCCACTCTCCACTTAGT 154785 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074 ||||| || | || ||| |||| |||||| | ||||||||| || | ||||| Sbjct 1977496 ACTGGTAAGACCATCACCCTCGAGGTCGAGTCTTCCGACACCATTGACAACGTCAAGACC 1977555 Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 ||||| ||||| || || || || || |||||||| | || || | || ||| ||| Sbjct 1977556 AAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAACAACGTCTTATCTTCGCCGGTAAG 1977615 Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187 |||||||| |||| ||||| | | || || ||||||||||| || || || Sbjct 1977616 CAACTCGAGGATGGCAGAACCCTTTCTGACTACAACATTCAAAAGGAGTCGAC 1977668 >seq2 Length=4956242 Score = 100 bits (110), Expect = 2e-16 Identities = 466/723 (64%), Gaps = 29/723 (4%) Strand=Plus/Minus Query 131999 GATTGACTCTGATCGATGTAAGGTCCCCTGTCTGCGGCCATATTCAACAATACT-TTCTG 132057 |||||||| |||||||| | | | | || || ||||||| ||| || | ||||| Sbjct 3634298 GATTGACTTTGATCGATAAAGGCAGCACGATCAGCAGCCATAT-CAATGATTGTCTTCTG 3634240 Query 132058 CTTAATTTCCCAAGCGGTCTTGAAGAGCGCCTTGACGTCGTGTGGAATGTCATCGATATT 132117 || |||||| | ||||| | | ||||||| || | || |||| | ||||| Sbjct 3634239 AGAAAGCTCCCAAACAGTCTTATACAATGCCTTGATATCCTCAGGGATGTTAGGAATATT 3634180 Query 132118 CTGTACAGATCCGTTGTTTTTGATAATTTTCATCATCA-GTTCTGTCGAGTACACGTTGC 132176 ||| | ||| || ||||| |||||| | || ||| ||||| || ||| || | Sbjct 3634179 CTGAATAGAACCATTGTTGGCAATAATTCTATTCTTCATGTTCTCTCCCC-ACA-GTCCC 3634122 Query 132177 AG-TCTACGAG----TTTATCGACGAGATGTTGATTTACTATTTGATATTCACCCGATAA 132231 | || || || || | | || | |||||| || ||||| ||||||| | | Sbjct 3634121 AAATCGACAAGGTCCTTCAACAACCA----TTGATTAACAATTTGGAATTCACCGGCAAG 3634066 Query 132232 GACTCTTCGTACGTACAAATTACTAGTAAACGGCTCGAACGATTCGTTGTTTCCCAATAT 132291 ||||| || ||| | || || | || ||||| |||||||||| || | || Sbjct 3634065 AACTCTACGAGAGTAGATGTTGGATGTGTAAGGTTCGAAACATTCGTTGTTACCAAGAAT 3634006 Query 132292 TTGAGCTGTCGTTGCCGTCGGCATGTAGGCAATCAATAATGAATTGCGCAGCCCGTGTAT 132351 ||| | ||| | || || ||||| |||| | | || || | ||| || || | Sbjct 3634005 TTGTGATGTTGAGGCAGTAGGCATAGGAGCAACGAGAAGGGAGTTTCTCAGACCATGCTT 3633946 Query 132352 GGCCATTTGCCGTTTAAGCTCGTCCCAGTTCCACAGATCATTCGATTGAGAGATATTCCA 132411 ||||| | | || || | |||||| ||| |||||| | | ||| ||||| ||| Sbjct 3633945 AGCCATCTTCTTCTTGAGAGCAGCCCAGTCCCAGAGATCAGTGG---GAGTGATATCCCA 3633889 Query 132412 CAAATCAAACTGTAAATGACCGCTACTTGCAGGAGATCCGTTATAAGAATCGTATGCTCC 132471 ||||||||| || ||| |||| | |||||||| || | |||| || || | ||| Sbjct 3633888 CAAATCAAATTGCAAAAGACCCTTTGAGGCAGGAGAACCTTGGTAAGTCTCATAGGGTCC 3633829 Query 132472 GTGTAATTTGGCAAGTTCTATGCTCTGACTC-AGGGCACCATAATAAATAGTCTCTGAGA 132530 || |||| ||| ||||| | | || || | ||| ||| ||| || ||||| | | Sbjct 3633828 GTACAATTCGGCGAGTTC-AACCGAAGATTCAACAGCAGCATGATAGATGGTCTCAGCAA 3633770 Query 132531 TTTTTCTATTCAATTCCCTTGCTTGTTGACTGTCGTAGGGCAAATTTAAA---ATAGCGA 132587 ||| ||||||| | | || | | |||| | |||||| | | ||| | Sbjct 3633769 TTTGAACGTTCAATTGCTTGGCCTCAGGGGAGTCGAATGGCAAACGGAGAGCCATA---A 3633713 Query 132588 ACGCATCGGCAAGTCCCTGAATGCCGATACCGATGGGTCTATGTTTAAAATTCGATACTT 132647 | |||||||| | || ||||| || | | | |||||||| || ||||| | | ||| Sbjct 3633712 AGGCATCGGCCAAACCTTGAATACCAAGAGCAATGGGTCTGTGACGGAAATT-GCTTCTT 3633654 Query 132648 GTGCGCT--AGTCAGCGGATAAAAGTTTTTGTCTATTATTTTATTGAGATTGTTAGTGAC 132705 | ||| | | || ||||||||| |||| || || ||| | || ||||||| Sbjct 3633653 -TCAGCTTCCTTGACAGGGTAAAAGTTTCTGTCAATAATAACATTCAAGTTTCTAGTGAC 3633595 Query 132706 AAC 132708 ||| Sbjct 3633594 AAC 3633592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935979040620