Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq3 141 8e-29
seq2 93.3 4e-14
>seq3
Length=2773601
Score = 141 bits (156), Expect = 8e-29
Identities = 165/218 (76%), Gaps = 6/218 (3%)
Strand=Plus/Plus
Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055
||||||||||| || |||||||| | || ||||| ||||||| | || || |||||
Sbjct 153890 ACAATGCAAATCTTCGTAAAGACCCTCACTGGTAAGACCATCACTCTTGAGGTTGAGTCC 153949
Query 25056 TCTGACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112
||||| |||||||| || || ||| | || | ||| ||||| ||||| ||||| ||
Sbjct 153950 TCTGATACTATCGA--CAATGTCAAGACCAAGATTCAA-GACAAGGAAGGTATTCCTCCA 154006
Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172
|||||||| | |||||||||| || || ||||||||||||| | || || |||
Sbjct 154007 GACCAACAAAGACTTATTTTTGCTGGTAAGCAATTAGAAGATGGCAGAACCTTGTCTGAT 154066
Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||||||||||||| ||||| || || || || || ||
Sbjct 154067 TACAATATTCAAAAGGAATCTACTCTTCACTTGGTTCT 154104
Score = 134 bits (148), Expect = 1e-26
Identities = 159/213 (75%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || |||||||| | || ||||| |||| || | ||||| ||||| |||
Sbjct 154121 ATGCAAATCTTCGTAAAGACCCTCACTGGTAAGACCATTACTCTTGAAGTTGAGTCCTCT 154180
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| ||||| || | ||| | |||| ||| ||||| ||||| ||||| || |||||
Sbjct 154181 GATACTATTGATAATGTTAAGACCAAAATTCAA-GACAAGGAAGGTATTCCTCCAGACCA 154239
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| | |||||||||| || || ||||||||||||| | || || ||||||||
Sbjct 154240 ACAAAGACTTATTTTTGCTGGTAAGCAATTAGAAGATGGCAGAACCTTGTCTGATTACAA 154299
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||||||| |||||||| || || || || ||
Sbjct 154300 CATTCAAAAGGAATCCACTCTCCACTTGGTTCT 154332
Score = 129 bits (142), Expect = 5e-25
Identities = 160/214 (75%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||||||||| ||||| | || || ||||||| || || |||
Sbjct 154577 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACTATTACTCTCGAAGTTGAATCCTCT 154636
Query 25059 GACACTATCGAGTCAC-TGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|| ||||| || | || | ||| | || | ||| ||||| || || ||||| || ||||
Sbjct 154637 GATACTATTGA-TAACGTCAAGACCAAGATTCAA-GACAAGGAGGGTATTCCTCCAGACC 154694
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
||||||| | ||||| || || || ||| | || |||| || ||| | ||| ||||
Sbjct 154695 AACAGCGTTTGATTTTCGCTGGTAAGCAACTCGAGGATGGCCGTACTCTCTCCGACTACA 154754
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
| |||||||| |||||||| || || ||||| ||
Sbjct 154755 ACATTCAAAAGGAATCCACTCTCCACTTAGTCCT 154788
Score = 125 bits (138), Expect = 6e-24
Identities = 157/213 (74%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||||||||| ||||| | || || ||||||| ||||| |||
Sbjct 154805 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACTATTACTCTCGAAGTCGAGTCCTCT 154864
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| |||||||| | ||| | || | ||| ||||| ||||| ||||| || |||||
Sbjct 154865 GATACTATCGACAACGTCAAGACTAAGATTCAA-GACAAGGAAGGTATTCCTCCAGACCA 154923
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|||||| | ||||| || || || ||||| ||||| | || ||| | ||| || ||
Sbjct 154924 ACAGCGTTTGATTTTCGCTGGTAAGCAATTGGAAGACGGCCGTACTCTCTCCGACTATAA 154983
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| ||||| ||||| || || || || || ||
Sbjct 154984 CATCCAAAAGGAATCTACTCTCCACTTGGTCCT 155016
>seq2
Length=4956242
Score = 93.3 bits (102), Expect = 4e-14
Identities = 147/209 (70%), Gaps = 4/209 (2%)
Strand=Plus/Minus
Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054
||| |||||||| || || ||||| | |||||||| | ||||| | || || |||||
Sbjct 2346130 AACGATGCAAATTTTCGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTTGAGTC 2346071
Query 25055 GTCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112
|| ||||||||||| || || ||| || ||| ||||| || || ||||| ||
Sbjct 2346070 TTCCGACACTATCGA--CAATGTCAAGACCAAGATCCAAGACAAGGAGGGAATTCCCCCA 2346013
Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172
|| ||||| || | || ||||| || || ||| | || |||| ||| || | ||
Sbjct 2346012 GATCAACAACGTTTGATCTTTGCTGGTAAGCAACTTGAGGATGGTCGTACCCTTTCTGAC 2345953
Query 25173 TACAATATTCAAAAAGAATCCACGCTACA 25201
||||| || ||||| || || || || ||
Sbjct 2345952 TACAACATCCAAAAGGAGTCTACTCTCCA 2345924
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327978875260
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |