Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq3 141 8e-29 seq2 93.3 4e-14 >seq3 Length=2773601 Score = 141 bits (156), Expect = 8e-29 Identities = 165/218 (76%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 ||||||||||| || |||||||| | || ||||| ||||||| | || || ||||| Sbjct 153890 ACAATGCAAATCTTCGTAAAGACCCTCACTGGTAAGACCATCACTCTTGAGGTTGAGTCC 153949 Query 25056 TCTGACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 ||||| |||||||| || || ||| | || | ||| ||||| ||||| ||||| || Sbjct 153950 TCTGATACTATCGA--CAATGTCAAGACCAAGATTCAA-GACAAGGAAGGTATTCCTCCA 154006 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 |||||||| | |||||||||| || || ||||||||||||| | || || ||| Sbjct 154007 GACCAACAAAGACTTATTTTTGCTGGTAAGCAATTAGAAGATGGCAGAACCTTGTCTGAT 154066 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||||||||| ||||| || || || || || || Sbjct 154067 TACAATATTCAAAAGGAATCTACTCTTCACTTGGTTCT 154104 Score = 134 bits (148), Expect = 1e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || |||||||| | || ||||| |||| || | ||||| ||||| ||| Sbjct 154121 ATGCAAATCTTCGTAAAGACCCTCACTGGTAAGACCATTACTCTTGAAGTTGAGTCCTCT 154180 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| || | ||| | |||| ||| ||||| ||||| ||||| || ||||| Sbjct 154181 GATACTATTGATAATGTTAAGACCAAAATTCAA-GACAAGGAAGGTATTCCTCCAGACCA 154239 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | |||||||||| || || ||||||||||||| | || || |||||||| Sbjct 154240 ACAAAGACTTATTTTTGCTGGTAAGCAATTAGAAGATGGCAGAACCTTGTCTGATTACAA 154299 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| |||||||| || || || || || Sbjct 154300 CATTCAAAAGGAATCCACTCTCCACTTGGTTCT 154332 Score = 129 bits (142), Expect = 5e-25 Identities = 160/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| ||||| | || || ||||||| || || ||| Sbjct 154577 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACTATTACTCTCGAAGTTGAATCCTCT 154636 Query 25059 GACACTATCGAGTCAC-TGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || ||||| || | || | ||| | || | ||| ||||| || || ||||| || |||| Sbjct 154637 GATACTATTGA-TAACGTCAAGACCAAGATTCAA-GACAAGGAGGGTATTCCTCCAGACC 154694 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||||| | ||||| || || || ||| | || |||| || ||| | ||| |||| Sbjct 154695 AACAGCGTTTGATTTTCGCTGGTAAGCAACTCGAGGATGGCCGTACTCTCTCCGACTACA 154754 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | |||||||| |||||||| || || ||||| || Sbjct 154755 ACATTCAAAAGGAATCCACTCTCCACTTAGTCCT 154788 Score = 125 bits (138), Expect = 6e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| ||||| | || || ||||||| ||||| ||| Sbjct 154805 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACTATTACTCTCGAAGTCGAGTCCTCT 154864 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || |||||||| | ||| | || | ||| ||||| ||||| ||||| || ||||| Sbjct 154865 GATACTATCGACAACGTCAAGACTAAGATTCAA-GACAAGGAAGGTATTCCTCCAGACCA 154923 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | ||||| || || || ||||| ||||| | || ||| | ||| || || Sbjct 154924 ACAGCGTTTGATTTTCGCTGGTAAGCAATTGGAAGACGGCCGTACTCTCTCCGACTATAA 154983 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| ||||| || || || || || || Sbjct 154984 CATCCAAAAGGAATCTACTCTCCACTTGGTCCT 155016 >seq2 Length=4956242 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 ||| |||||||| || || ||||| | |||||||| | ||||| | || || ||||| Sbjct 2346130 AACGATGCAAATTTTCGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTTGAGTC 2346071 Query 25055 GTCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 || ||||||||||| || || ||| || ||| ||||| || || ||||| || Sbjct 2346070 TTCCGACACTATCGA--CAATGTCAAGACCAAGATCCAAGACAAGGAGGGAATTCCCCCA 2346013 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 || ||||| || | || ||||| || || ||| | || |||| ||| || | || Sbjct 2346012 GATCAACAACGTTTGATCTTTGCTGGTAAGCAACTTGAGGATGGTCGTACCCTTTCTGAC 2345953 Query 25173 TACAATATTCAAAAAGAATCCACGCTACA 25201 ||||| || ||||| || || || || || Sbjct 2345952 TACAACATCCAAAAGGAGTCTACTCTCCA 2345924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327978875260