Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2 197 2e-45 >seq2 Length=4956242 Score = 197 bits (218), Expect = 2e-45 Identities = 519/783 (66%), Gaps = 13/783 (2%) Strand=Plus/Minus Query 92918 AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 |||||||| ||||| ||||| || ||||| || |||| | | ||||||||| | | Sbjct 3220193 AATAATCTGTCAGCAACAAACTCAATGTATTGGCACATAAGCTTGGCATTCATTCCCAAA 3220134 Query 92978 AGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAA 93036 |||| |||| || | ||| || |||||||| || || || || | ||||||||| | | Sbjct 3220133 AGAC-TACATGGCAAAGCATCAGTCAAGAACTCCTTTTCAATAATAACGGCTTCAGTGAT 3220075 Query 93037 GAT---TTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCA 93093 || ||| || || | || ||| | ||| || | | | | | || || Sbjct 3220074 AATCTTTTCAATAACAGACTTCTTAGGTC--TGTTG-ACAAGGTGGCCGAAAAGCAAACA 3220018 Query 93094 CGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACC 93153 ||||| ||||| || | ||||| || || || ||||| || || ||| || | ||| Sbjct 3220017 AGCAAAATCGGTGTGCATGCCTTCATCACGCGAGATCAATTCGTTTGAGAACGTCAGACC 3219958 Query 93154 TGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTAT 93213 || | ||||| || ||||| | ||| || || ||||| ||||| || || || Sbjct 3219957 AGGCATGAGTCCACGCTTCTTCAACCAGAAGATACTGGCAAATGATCCAGAGAAGAAGAT 3219898 Query 93214 ACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTA-CTGCTGA 93272 ||| || ||||| ||||| || || | ||| || |||||| | | || | | || | Sbjct 3219897 ACCCTCAACGGCAGCAAAGGCAACGAGACGCTCAGCAAAAGTGGACTGATCATCAGCA-A 3219839 Query 93273 TCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAA 93332 ||||| | |||||| || || || ||||||||||| || | | || ||||| | | Sbjct 3219838 TCCATCGGAGAGCCCAGTCAGCCTTCTTCTTAATACATGGAATATTGTCAATAGCATGGA 3219779 Query 93333 ATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTT 93392 | | | | ||| | | ||| || || || || || | | || || | | Sbjct 3219778 ACAAAAAGTTAGCCTCCTTAGCATCCTTGATATAAGTGTCAATAAGTAATGAGTAGGTCT 3219719 Query 93393 CAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCT 93452 | | ||||| |||||||| ||||||||| ||||| ||||| | || || | || | Sbjct 3219718 CTGCATGGATGTTCTCCATCATAATTTGGAAACCGTAAAAACACTTTGCCTCGGGAATTT 3219659 Query 93453 GCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaa 93512 | ||||| ||| ||||| || || | || || ||||| |||||||| || || |||| Sbjct 3219658 GAACTTCACCAGAGAATCTTTCAACCAAGTTCTCGTTGACGATACCATCTGAAGCAGCAA 3219599 Query 93513 aaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA---GCTTATCCCAAT 93569 | || || | | | | |||||| | |||||||||| |||| | | ||||| | Sbjct 3219598 AGAATGCAAGGACACGAGAGATAAAAAATCTCTCATCATCATTAAGACGGTGCTCCCAGT 3219539 Query 93570 CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTT 93629 | | || ||| | ||| | |||||| ||||||| || || || || || | | Sbjct 3219538 CACTGATGTCCTTTCCTAAATCAATTTCTTCAGCAGTCCAGAAAGAAGCCTCAGCCTGCT 3219479 Query 93630 TGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTAT 93689 ||||||| | ||| || || || || | ||| || || | ||||| | |||||||| | Sbjct 3219478 TGTACATTTGCCAAATCTCATGGTACTTAATAGGGAACAGAACAAATCTGTTAGGGTTTT 3219419 Query 93690 CTT 93692 ||| Sbjct 3219418 CTT 3219416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860772156960