Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq3 143 2e-29 seq2 125 6e-24 >seq3 Length=2773601 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||||| || ||||| || | ||||| ||||| ||| || | Sbjct 154577 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACTATTACTCTCGAAGTTGAATCCTCT 154636 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | |||| || ||||||||||||||||||||||| || || ||| Sbjct 154637 GATACTATTGATAACGTCAAGACCAAGATTCAAGACAAGGAGGGTATTCCTCCAGACCAA 154696 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || || || | |||||| ||| || ||||||| |||||| Sbjct 154697 CAGCGTTTGATTTTCGCTGGTAAGCAACTCGAGGATGGCCGTACTCTCTCCGACTACAAC 154756 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 |||||||| |||||||| | || ||||| Sbjct 154757 ATTCAAAAGGAATCCACTCTCCACTTAGT 154785 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || ||||| || | ||||||||||| || || | Sbjct 154121 ATGCAAATCTTCGTAAAGACCCTCACTGGTAAGACCATTACTCTTGAAGTTGAGTCCTCT 154180 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || ||||||||||||||||| |||||||| || || ||| Sbjct 154181 GATACTATTGATAATGTTAAGACCAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 154240 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | ||||| ||||| || || || ||||| ||| | | ||| | || ||||||||| Sbjct 154241 CAAAGACTTATTTTTGCTGGTAAGCAATTAGAAGATGGCAGAACCTTGTCTGATTACAAC 154300 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| |||||||| | || || ||| | || | || || ||| Sbjct 154301 ATTCAAAAGGAATCCACTCTCCACTTGGTTCTTCGTCTTCGTGGTGGT 154348 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || ||||| || |||||||||| || || || | Sbjct 153893 ATGCAAATCTTCGTAAAGACCCTCACTGGTAAGACCATCACTCTTGAGGTTGAGTCCTCT 153952 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || |||| || |||||||||||||| |||||||| || || ||| Sbjct 153953 GATACTATCGACAATGTCAAGACCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 154012 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | ||||| ||||| || || || ||||| ||| | | ||| | || |||||||| Sbjct 154013 CAAAGACTTATTTTTGCTGGTAAGCAATTAGAAGATGGCAGAACCTTGTCTGATTACAAT 154072 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| ||||| || | || || ||| | || | || || ||| Sbjct 154073 ATTCAAAAGGAATCTACTCTTCACTTGGTTCTTCGTCTTCGTGGTGGT 154120 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || || || || || |||| || ||||| || || | Sbjct 154349 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACCATCACCCTCGAAGTCGAGTCCTCT 154408 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || || || |||||||||||||||||||| || || ||| Sbjct 154409 GATACTATTGATAATGTTAAGACTAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAA 154468 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | ||||| ||||| || || || | |||||| || || | ||||| |||||| Sbjct 154469 CAAAGACTTATCTTTGCTGGTAAGCAACTCGAGGATGGTCGTACTCTTTCCGACTACAAC 154528 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| ||||| || | || |||||| | || | || || ||| Sbjct 154529 ATTCAAAAGGAATCTACTCTTCACTTAGTTCTCCGTCTCCGTGGTGGT 154576 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||||| || ||||| || | ||||| ||||| || || | Sbjct 154805 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACTATTACTCTCGAAGTCGAGTCCTCT 154864 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| | |||| || |||||||||||||| |||||||| || || ||| Sbjct 154865 GATACTATCGACAACGTCAAGACTAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 154924 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || || || || || || ||| || ||||||| || ||| Sbjct 154925 CAGCGTTTGATTTTCGCTGGTAAGCAATTGGAAGACGGCCGTACTCTCTCCGACTATAAC 154984 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||| ||||| || Sbjct 154985 ATCCAAAAGGAATCTAC 155001 Score = 111 bits (122), Expect = 1e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| || || || | || ||||| || |||| || || || || | |||| ||| | Sbjct 1977480 TTTCGTCAAGACCCTTACTGGTAAGACCATCACCCTCGAGGTCGAGTCTTCCGACACCAT 1977539 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| | |||| || || |||||||||||||| ||||| || |||||||||||||| Sbjct 1977540 TGACAACGTCAAGACCAAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAACAACGTCT 1977599 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 ||| || ||||| || || | |||||| | | ||| | || || |||||||||||||| Sbjct 1977600 TATCTTCGCCGGTAAGCAACTCGAGGATGGCAGAACCCTTTCTGACTACAACATTCAAAA 1977659 Query 22407 AGAATCCAC 22415 || || || Sbjct 1977660 GGAGTCGAC 1977668 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || ||||| || |||| || || || || | | Sbjct 155033 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACTATCACGCTCGAGGTCGAGTCTTCG 155092 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || |||||||||||||| ||||| || || ||| Sbjct 155093 GACACCATTGATAATGTCAAGACCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAA 155152 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || |||||||| || ||| | || || || || ||||||| |||||| Sbjct 155153 CAAAGACTCATCTTTGCCGGTAAGCAGCTCGAAGACGGTCGTACTCTCTCCGACTACAAC 155212 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || || || || ||| | || || || Sbjct 155213 ATCCAGAAGGAGTCGACCCTCCACTTGGT 155241 >seq2 Length=4956242 Score = 125 bits (138), Expect = 6e-24 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 ||| |||||||||||| || || || | |||||||| || |||| ||||| || || Sbjct 2346131 TAACGATGCAAATTTTCGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTTGAGT 2346072 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 | |||| || | ||| || |||| || || |||||||||||||| ||||| || | Sbjct 2346071 CTTCCGACACTATCGACAATGTCAAGACCAAGATCCAAGACAAGGAGGGAATTCCCCCAG 2346012 Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393 ||||||||||| | || ||||| || || || | |||||| || ||| | || || | Sbjct 2346011 ATCAACAACGTTTGATCTTTGCTGGTAAGCAACTTGAGGATGGTCGTACCCTTTCTGACT 2345952 Query 22394 ACAACATTCAAAAAGAATCCAC 22415 ||||||| ||||| || || || Sbjct 2345951 ACAACATCCAAAAGGAGTCTAC 2345930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727979538260