Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2 123 5e-23 seq3 107 4e-18 >seq2 Length=4956242 Score = 123 bits (136), Expect = 5e-23 Identities = 361/545 (66%), Gaps = 16/545 (3%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| ||||| ||||||| ||||| || || ||||||| ||||| |||| ||| Sbjct 530832 GGTGAGGACTTGTGTAACTGTGAGTTCTCTCTTGCTTATGGTGCCAAGATCTTGCTTAAC 530773 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 ||||| ||| | ||||||| | || ||||||||| ||||| || || || Sbjct 530772 CGTACCCAACTCCGTCTTAAGCGTGCCCGTCGTTATGGTCTCTGTGGTCCTAACGGTGCT 530713 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 |||||| ||||| ||| | || ||||| |||||||| | || || || |||| | Sbjct 530712 GGTAAGTCTACTCTTATGAGAGCTATTGCCAACGGTCAAGTCGAGGGTTTCCCTACTCAA 530653 Query 279525 TCTGAG-GTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCAC 279583 |||| ||||| || || || || |||||||| ||||| | | | | || | || Sbjct 530652 GATGAGTGTAAG-ACTGTCTACGTCGAGCACGATATCGATGGTACCCACGCCGACACCAA 530594 Query 279584 TGTGTTCGACTTCCTAACGTCTGACAAT-CAGGTTATGGAAATCAGCTCTCCTGAGGAAA 279642 || | |||| | | | || | || | ||| | ||| | | || ||| Sbjct 530593 CGTTGTTGACTACGTTA--TC-GCCACCGCCGGTGA-GGAGGTTGGTTCCAAGGAGACTG 530538 Query 279643 TCATCCAGAAACTGGAGGCCAATGGTTTTGATGAAAGAATGCGTAATCTGCCAGTAGGTT 279702 | | | ||| ||| | ||||| | | | ||| | | |||| | | Sbjct 530537 TTACCAAGACTTTGGTTGAGTTCGGTTTCGTCAATGGTATGACTGAGATGCCCATCACCT 530478 Query 279703 CTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCT---CACTCGCGCCATTCTACTGCGTG 279759 || |||| |||||||||||||||||| |||| || |||| ||| | || | | Sbjct 530477 CTTTGTCTGGTGGTTGGAAGATGAAGTTGGCTCTTGCCACT---GCCGTCCTCCGTAACG 530421 Query 279760 CCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGC 279819 | ||| || | |||| |||||||| ||||| ||| |||| ||| |||||| || ||| Sbjct 530420 CTGATATCTTGTTGCTCGATGAGCCTACCAATCACTTGGATACCGTCAACGTTGCTTGGT 530361 Query 279820 TAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTG 279879 | | |||| | |||| ||| | || | |||| ||||||||||||||||||||| Sbjct 530360 TGATCAACTACTTGACCAC-CTGTAACAT--TACTTCTATCATTGTCTCTCACGACTCTG 530304 Query 279880 GCTTC 279884 | ||| Sbjct 530303 GTTTC 530299 Score = 107 bits (118), Expect = 4e-18 Identities = 183/262 (70%), Gaps = 5/262 (2%) Strand=Plus/Minus Query 293031 TGTTTTAAGACCCTTCTTCCATGCGTAGAACAGCATAGATGTCA--TAGACTTCAGTGTG 293088 ||| ||||||||||| | ||| ||||||| ||||| |||| | | | || || Sbjct 3634380 TGTCTTAAGACCCTTTTGCCAGCCGTAGAAATGCATACTAGTCAATTTGCC--CATAGTA 3634323 Query 293089 GGAGTGGCCAGGAAAAGGTTCATGCTCTGCGTCTGATCGACAAAGGCACCACGATCAGCA 293148 |||| | | ||| ||||| || | ||||||| ||||||| ||||||||||| Sbjct 3634322 GGAGCTTGAATGTAAATGTTCAAAGATTGACTTTGATCGATAAAGGCAGCACGATCAGCA 3634263 Query 293149 GCGAGGTCAATCACTGTCTTCATAGAGATCTCCCACGATGTCTTGTACACTGCCTTGACA 293208 || | ||||| | ||||||| ||| | |||||| ||||| |||| |||||||| | Sbjct 3634262 GCCATATCAATGATTGTCTTCTGAGAAAGCTCCCAAACAGTCTTATACAATGCCTTGATA 3634203 Query 293209 TCAGGATGAATGCCAATAACCTTCTGGATAGACCCTCCGTTGGCAATAATCTGGTTCTTC 293268 || | | ||| | || ||||| ||||| || |||||||||||| |||||| Sbjct 3634202 TCCTCAGGGATGTTAGGAATATTCTGAATAGAACCATTGTTGGCAATAATTCTATTCTTC 3634143 Query 293269 ATTGTCTCGGACCA-AGTCCCA 293289 || |||| ||| ||||||| Sbjct 3634142 ATGTTCTCTCCCCACAGTCCCA 3634121 >seq3 Length=2773601 Score = 107 bits (118), Expect = 4e-18 Identities = 306/467 (66%), Gaps = 20/467 (4%) Strand=Plus/Plus Query 218585 TGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTGG 218644 ||||||| ||||||| ||||||||||| || | | |||||||| ||| ||| Sbjct 2461646 TGGATGGATTCAAGCCCGGTCAGCGTAAGATTCTGTACGGTTGTTTCAAGCGTAACTTGG 2461705 Query 218645 TTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATC 218704 | | ||||| || || ||||| || |||||||||||| |||| |||| ||||| | Sbjct 2461706 TCAACGAAATCAAAGTAGCTCAATTGGGTGGTTATGTATCAGAAAACACTGGTTACCACC 2461765 Query 218705 ACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTA 218764 |||| || ||| ||| | ||||||| || | || || || | ||| || | Sbjct 2461766 ACGGAGAACAGTCGCTGTACCAAACCATTGTTGGTCTTGCGCAAGATTTTGTTGGTTCCA 2461825 Query 218765 ACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGG 218824 | ||||| | || ||| | |||||||| ||||| |||||| |||||||||| | Sbjct 2461826 ATAACATTTATTTCCTGATGCCCAACGGAAGTTTTGGATCTCGTGCCATGGGTGGAAAAG 2461885 Query 218825 ATAGTGCTTCTG---CCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGT 218881 | |||||| | | | ||||| || || ||||| | | ||| | | | | Sbjct 2461886 A---TGCTTCGGCACCTCGTTATATTTTCACCGAGTTGAACTCTTTAACGAGAAAAATCT 2461942 Query 218882 TCAATCAGGCCGATGATGTGCTCCTT----AAGTATCTTGAGGACGATGGTTCTTCGATT 218937 || ||| |||||| |||| ||||| | || ||||||| |||| | | Sbjct 2461943 TCCATCCTCAAGATGAT----CCCTTGTACAAGTACATGGAAGACGATGATTCTACTGTC 2461998 Query 218938 GAGCCCGAGTGGTATGTGCCTGCTATTC---CGTTTTTGCTCGTAAATGGTGCCAATGGT 218994 ||||| || ||||||| || ||| | | ||||| || ||||| | | ||| Sbjct 2461999 GAGCCTGAATGGTATGCACCGATTATCCCCACAGTTTTG---GTCAATGGCGGTGAAGGT 2462055 Query 218995 ATCGGGACAGGGTTCAGTACTGACATTCCTTCTTACAATCCCAAGGA 219041 || || || || | ||||| | || || | ||| |||||| |||| Sbjct 2462056 ATTGGTACTGGATGGAGTACCAATATCCCATGTTATAATCCCGAGGA 2462102 Score = 91.5 bits (100), Expect = 3e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 280177 TTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGG 280236 |||||||||||||||| ||||| ||||| || ||||| || ||||||| ||| Sbjct 2741838 TTGGACCCAATGGTGCAGGTAAATCTACTCTTATCAAGCTCTTGACTGGTGAGTTGATTC 2741897 Query 280237 CCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACG 280296 ||| || || | ||| ||||||||| || | || || | || |||| ||||||| Sbjct 2741898 CCAACGAAGGTACTGTTGAGAAGCATCCTAATCTACGTATCGGATATATCGCACAGCACG 2741957 Query 280297 CTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCT 280356 |||| || || | ||| |||| ||| | |||| | || ||||| | || ||| | | Sbjct 2741958 CTTTGCAGCATGTTGAGCTCCACAAGGAGAAGACTGCCAATCAATATCTGCAATGGAGAT 2742017 Query 280357 ATGCAAGTGG 280366 |||| | ||| Sbjct 2742018 ATGCTAATGG 2742027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836747323364