Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq2 123 5e-23
seq3 107 4e-18
>seq2
Length=4956242
Score = 123 bits (136), Expect = 5e-23
Identities = 361/545 (66%), Gaps = 16/545 (3%)
Strand=Plus/Minus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
|||||||| ||||| ||||||| ||||| || || ||||||| ||||| |||| |||
Sbjct 530832 GGTGAGGACTTGTGTAACTGTGAGTTCTCTCTTGCTTATGGTGCCAAGATCTTGCTTAAC 530773
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
||||| ||| | ||||||| | || ||||||||| ||||| || || ||
Sbjct 530772 CGTACCCAACTCCGTCTTAAGCGTGCCCGTCGTTATGGTCTCTGTGGTCCTAACGGTGCT 530713
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|||||| ||||| ||| | || ||||| |||||||| | || || || |||| |
Sbjct 530712 GGTAAGTCTACTCTTATGAGAGCTATTGCCAACGGTCAAGTCGAGGGTTTCCCTACTCAA 530653
Query 279525 TCTGAG-GTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCAC 279583
|||| ||||| || || || || |||||||| ||||| | | | | || | ||
Sbjct 530652 GATGAGTGTAAG-ACTGTCTACGTCGAGCACGATATCGATGGTACCCACGCCGACACCAA 530594
Query 279584 TGTGTTCGACTTCCTAACGTCTGACAAT-CAGGTTATGGAAATCAGCTCTCCTGAGGAAA 279642
|| | |||| | | | || | || | ||| | ||| | | || |||
Sbjct 530593 CGTTGTTGACTACGTTA--TC-GCCACCGCCGGTGA-GGAGGTTGGTTCCAAGGAGACTG 530538
Query 279643 TCATCCAGAAACTGGAGGCCAATGGTTTTGATGAAAGAATGCGTAATCTGCCAGTAGGTT 279702
| | | ||| ||| | ||||| | | | ||| | | |||| | |
Sbjct 530537 TTACCAAGACTTTGGTTGAGTTCGGTTTCGTCAATGGTATGACTGAGATGCCCATCACCT 530478
Query 279703 CTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCT---CACTCGCGCCATTCTACTGCGTG 279759
|| |||| |||||||||||||||||| |||| || |||| ||| | || | |
Sbjct 530477 CTTTGTCTGGTGGTTGGAAGATGAAGTTGGCTCTTGCCACT---GCCGTCCTCCGTAACG 530421
Query 279760 CCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGC 279819
| ||| || | |||| |||||||| ||||| ||| |||| ||| |||||| || |||
Sbjct 530420 CTGATATCTTGTTGCTCGATGAGCCTACCAATCACTTGGATACCGTCAACGTTGCTTGGT 530361
Query 279820 TAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTG 279879
| | |||| | |||| ||| | || | |||| |||||||||||||||||||||
Sbjct 530360 TGATCAACTACTTGACCAC-CTGTAACAT--TACTTCTATCATTGTCTCTCACGACTCTG 530304
Query 279880 GCTTC 279884
| |||
Sbjct 530303 GTTTC 530299
Score = 107 bits (118), Expect = 4e-18
Identities = 183/262 (70%), Gaps = 5/262 (2%)
Strand=Plus/Minus
Query 293031 TGTTTTAAGACCCTTCTTCCATGCGTAGAACAGCATAGATGTCA--TAGACTTCAGTGTG 293088
||| ||||||||||| | ||| ||||||| ||||| |||| | | | || ||
Sbjct 3634380 TGTCTTAAGACCCTTTTGCCAGCCGTAGAAATGCATACTAGTCAATTTGCC--CATAGTA 3634323
Query 293089 GGAGTGGCCAGGAAAAGGTTCATGCTCTGCGTCTGATCGACAAAGGCACCACGATCAGCA 293148
|||| | | ||| ||||| || | ||||||| ||||||| |||||||||||
Sbjct 3634322 GGAGCTTGAATGTAAATGTTCAAAGATTGACTTTGATCGATAAAGGCAGCACGATCAGCA 3634263
Query 293149 GCGAGGTCAATCACTGTCTTCATAGAGATCTCCCACGATGTCTTGTACACTGCCTTGACA 293208
|| | ||||| | ||||||| ||| | |||||| ||||| |||| |||||||| |
Sbjct 3634262 GCCATATCAATGATTGTCTTCTGAGAAAGCTCCCAAACAGTCTTATACAATGCCTTGATA 3634203
Query 293209 TCAGGATGAATGCCAATAACCTTCTGGATAGACCCTCCGTTGGCAATAATCTGGTTCTTC 293268
|| | | ||| | || ||||| ||||| || |||||||||||| ||||||
Sbjct 3634202 TCCTCAGGGATGTTAGGAATATTCTGAATAGAACCATTGTTGGCAATAATTCTATTCTTC 3634143
Query 293269 ATTGTCTCGGACCA-AGTCCCA 293289
|| |||| ||| |||||||
Sbjct 3634142 ATGTTCTCTCCCCACAGTCCCA 3634121
>seq3
Length=2773601
Score = 107 bits (118), Expect = 4e-18
Identities = 306/467 (66%), Gaps = 20/467 (4%)
Strand=Plus/Plus
Query 218585 TGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTGG 218644
||||||| ||||||| ||||||||||| || | | |||||||| ||| |||
Sbjct 2461646 TGGATGGATTCAAGCCCGGTCAGCGTAAGATTCTGTACGGTTGTTTCAAGCGTAACTTGG 2461705
Query 218645 TTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATC 218704
| | ||||| || || ||||| || |||||||||||| |||| |||| ||||| |
Sbjct 2461706 TCAACGAAATCAAAGTAGCTCAATTGGGTGGTTATGTATCAGAAAACACTGGTTACCACC 2461765
Query 218705 ACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTA 218764
|||| || ||| ||| | ||||||| || | || || || | ||| || |
Sbjct 2461766 ACGGAGAACAGTCGCTGTACCAAACCATTGTTGGTCTTGCGCAAGATTTTGTTGGTTCCA 2461825
Query 218765 ACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGG 218824
| ||||| | || ||| | |||||||| ||||| |||||| |||||||||| |
Sbjct 2461826 ATAACATTTATTTCCTGATGCCCAACGGAAGTTTTGGATCTCGTGCCATGGGTGGAAAAG 2461885
Query 218825 ATAGTGCTTCTG---CCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGT 218881
| |||||| | | | ||||| || || ||||| | | ||| | | | |
Sbjct 2461886 A---TGCTTCGGCACCTCGTTATATTTTCACCGAGTTGAACTCTTTAACGAGAAAAATCT 2461942
Query 218882 TCAATCAGGCCGATGATGTGCTCCTT----AAGTATCTTGAGGACGATGGTTCTTCGATT 218937
|| ||| |||||| |||| ||||| | || ||||||| |||| | |
Sbjct 2461943 TCCATCCTCAAGATGAT----CCCTTGTACAAGTACATGGAAGACGATGATTCTACTGTC 2461998
Query 218938 GAGCCCGAGTGGTATGTGCCTGCTATTC---CGTTTTTGCTCGTAAATGGTGCCAATGGT 218994
||||| || ||||||| || ||| | | ||||| || ||||| | | |||
Sbjct 2461999 GAGCCTGAATGGTATGCACCGATTATCCCCACAGTTTTG---GTCAATGGCGGTGAAGGT 2462055
Query 218995 ATCGGGACAGGGTTCAGTACTGACATTCCTTCTTACAATCCCAAGGA 219041
|| || || || | ||||| | || || | ||| |||||| ||||
Sbjct 2462056 ATTGGTACTGGATGGAGTACCAATATCCCATGTTATAATCCCGAGGA 2462102
Score = 91.5 bits (100), Expect = 3e-13
Identities = 134/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 280177 TTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGG 280236
|||||||||||||||| ||||| ||||| || ||||| || ||||||| |||
Sbjct 2741838 TTGGACCCAATGGTGCAGGTAAATCTACTCTTATCAAGCTCTTGACTGGTGAGTTGATTC 2741897
Query 280237 CCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACG 280296
||| || || | ||| ||||||||| || | || || | || |||| |||||||
Sbjct 2741898 CCAACGAAGGTACTGTTGAGAAGCATCCTAATCTACGTATCGGATATATCGCACAGCACG 2741957
Query 280297 CTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCT 280356
|||| || || | ||| |||| ||| | |||| | || ||||| | || ||| | |
Sbjct 2741958 CTTTGCAGCATGTTGAGCTCCACAAGGAGAAGACTGCCAATCAATATCTGCAATGGAGAT 2742017
Query 280357 ATGCAAGTGG 280366
|||| | |||
Sbjct 2742018 ATGCTAATGG 2742027
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027836747323364
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |