Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq3 125 6e-24
>seq3
Length=2773601
Score = 125 bits (138), Expect = 6e-24
Identities = 168/231 (73%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | |||||| || | |||||||| |||||||||||||| |||
Sbjct 154578 ATACCACCACGGAGACGGAGAACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCG 154519
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||||||| ||| || ||||| |||||||| |||| || | |||||||| |||
Sbjct 154518 GAAAGAGTACGACCATCCTCGAGTTGCTTACCAGCAAAGATAAGTCTTTGTTGGTCTGGA 154459
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331
||||| || || ||||| ||| || || ||| | | |||| || || | ||| ||
Sbjct 154458 GGAATACCCTCCTTGTCTTGGATC-TTAGTCTTAACATTATCAATAGTATCAGAGGACTC 154400
Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
||| || | ||| | || || || |||| || || ||||| || |||||
Sbjct 154399 GACTTCGAGGGTGATGGTCTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 154349
Score = 118 bits (130), Expect = 9e-22
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | ||||| || | || ||||| |||||||||||||| |||
Sbjct 154806 ATACCACCACGGAGACGGAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCG 154747
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| |||||| ||| || ||||| ||||||||| | || | |||||||||||| |||
Sbjct 154746 GAGAGAGTACGGCCATCCTCGAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGA 154687
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| || || ||||| |||||| || | | |||| || || | ||||||
Sbjct 154686 GGAATACCCTCCTTGTCTTGAATCTTGGTCTTGACGTTATCAATAGTATCAGAGGATTCA 154627
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | || | || || || |||| ||| || || || || |||||
Sbjct 154626 ACTTCGAGAGTAATAGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 154577
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | || || || | |||||||| ||||| ||||| || |||
Sbjct 155034 ATACCACCACGAAGACGGAGGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTATAGTCG 154975
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| |||||| ||||| | ||| ||||||||| | || | |||||||||||| |||
Sbjct 154974 GAGAGAGTACGGCCGTCTTCCAATTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGA 154915
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| ||||| ||||| |||||| || | | || | || || | ||| |||
Sbjct 154914 GGAATACCTTCCTTGTCTTGAATCTTAGTCTTGACGTTGTCGATAGTATCAGAGGACTCG 154855
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | || | || || || |||| ||| || || || || |||||
Sbjct 154854 ACTTCGAGAGTAATAGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 154805
Score = 98.7 bits (108), Expect = 8e-16
Identities = 162/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | ||| || || | || ||||| |||||||||||||||||
Sbjct 154350 ATACCACCACGAAGACGAAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCA 154291
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| || | |||||| | ||| |||||||| | || || | |||||||| |||
Sbjct 154290 GACAAGGTTCTGCCATCTTCTAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGA 154231
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331
||||| ||||| ||||| ||| ||| || ||| | | |||| || || | ||| ||
Sbjct 154230 GGAATACCTTCCTTGTCTTGAAT-TTTGGTCTTAACATTATCAATAGTATCAGAGGACTC 154172
Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | || | || || || || || || ||||| || || |||||
Sbjct 154171 AACTTCAAGAGTAATGGTCTTACCAGTGAGGGTCTTTACGAAGATTTGCAT 154121
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420134379518448
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |