Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq2 89.7 1e-12
>seq2
Length=4956242
Score = 89.7 bits (98), Expect = 1e-12
Identities = 553/870 (64%), Gaps = 28/870 (3%)
Strand=Plus/Plus
Query 42289 AGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGG 42348
|| |||| || || ||| ||||||||| |||| || || |||||| || || |
Sbjct 3219452 AGTACCATGAGATTTGGCAAATGTACAAGCAGGCTGAGGCTTCTTTCTGGACTGCTGAAG 3219511
Query 42349 AGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAG 42404
| ||||| | | ||||||| | ||||||| ||| |||| | || | || |
Sbjct 3219512 AAATTGATTTAGGAAAGGACATCAGTGACTGGGAG-CACCGTCTTAATGATGATGAGAGA 3219570
Query 42405 TTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAAC 42464
||||| || | || || ||||| || || || || || || ||||| ||||||
Sbjct 3219571 TTTTTTATCTCTCGTGTCCTTGCATTCTTTGCTGCTTCAGATGGTATCGTCAACGAGAAC 3219630
Query 42465 CTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTT--GAGGCGCGCTGCTTCTACGGCT 42522
||| || ||| || || || | || ||||| || || ||||| |
Sbjct 3219631 TTGGTTGAAAGATTCTCTGGTGAAGTTCA--AATTCCCGAGGCAAAGTGTTTTTACGGTT 3219688
Query 42523 TCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACA 42582
|||| || || |||||| | || | ||| ||| | ||| | |||| || |
Sbjct 3219689 TCCAAATTATGATGGAGAACATCCATGCAGAGACCTACTCATTACTTATTGACACTTATA 3219748
Query 42583 TCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCA 42642
|| |||| | ||| |||| ||||| | || || || | || || || || |
Sbjct 3219749 TCAAGGATGCTAAGGAGGCTAACTTTTTGTTCCATGCTATTGACAATATTCCATGTATTA 3219808
Query 42643 AGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGA 42702
|||||||||| |||||||| ||| ||||| | | | | || || | |||
Sbjct 3219809 AGAAGAAGGCTGACTGGGCTCTCCGATGGATTGCTGATGATCAGTCCACTTTTGCTGAGC 3219868
Query 42703 GGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCT 42762
| || || |||||| | ||||| ||||| ||||||||||| || | || ||| ||||
Sbjct 3219869 GTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCTCTGGATCATTTGCCAGTATCT 3219928
Query 42763 TCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGC 42821
||||| | ||| || || || ||||| || || || ||||| |||||| | |||
Sbjct 3219929 TCTGGTTGAAGAAGCGTGGACTC-ATGCCTGGTCTGACGTTCTCAAACGAATTGATCTCG 3219987
Query 42822 AGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCAC 42881
| || || || |||| | || ||||| || | || ||| ||||||| | ||
Sbjct 3219988 CGTGATGAAGGCATGCACACCGATTTTGCTTGTTTGCTTTTC---GGCCACCT-TGTCAA 3220043
Query 42882 AAGCCCTCGAAGGAG-CGGGTCCGG--GCCATCATCACGGAGGCCGTGGAGATCGAGAAG 42938
|| ||| ||| || | | | | || ||||| || ||||| || || |||
Sbjct 3220044 CAGACCT--AAGAAGTCTGTTATTGAAAAGATTATCACTGAAGCCGTTATTATTGAAAAG 3220101
Query 42939 GAGTTCCTCACGCAGTCGCTGCCCGTGT-CCCTGGTCGGCATGAACCACGACCTCATGTG 42997
|||||| | || | | || || ||| || | || ||||| | | || |||||
Sbjct 3220102 GAGTTCTTGACTGATGCTTTG-CCATGTAGTCTTTTGGGAATGAATGCCAAGCTTATGTG 3220160
Query 42998 CAAGTACATCCAGTACGTCGCCGAC-CAT--CTCCTGTGCCAGATGGGTCTCAGCCGCCT 43054
| | ||||| ||| || || ||| || | || | || | ||| ||| |
Sbjct 3220161 CCAATACATTGAGTTTGTTGCTGACAGATTATTACTTTCCC---TTGGTAACAGTAAGGT 3220217
Query 43055 CTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAA 43114
|| || | | |||||| || || ||||| |||||||| ||| |||||||||||
Sbjct 3220218 ATATAATGCTACCAACCCCTTTGATTTCATGGAAAACATCTCATTGTCTGGCAAGACCAA 3220277
Query 43115 CTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144
||| || |||||| | || | ||||| ||
Sbjct 3220278 CTTCTTTGAGAAGAGAGTGTCTGACTATCA 3220307
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944339152783040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |