Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2 89.7 1e-12 >seq2 Length=4956242 Score = 89.7 bits (98), Expect = 1e-12 Identities = 553/870 (64%), Gaps = 28/870 (3%) Strand=Plus/Plus Query 42289 AGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGG 42348 || |||| || || ||| ||||||||| |||| || || |||||| || || | Sbjct 3219452 AGTACCATGAGATTTGGCAAATGTACAAGCAGGCTGAGGCTTCTTTCTGGACTGCTGAAG 3219511 Query 42349 AGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAG 42404 | ||||| | | ||||||| | ||||||| ||| |||| | || | || | Sbjct 3219512 AAATTGATTTAGGAAAGGACATCAGTGACTGGGAG-CACCGTCTTAATGATGATGAGAGA 3219570 Query 42405 TTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAAC 42464 ||||| || | || || ||||| || || || || || || ||||| |||||| Sbjct 3219571 TTTTTTATCTCTCGTGTCCTTGCATTCTTTGCTGCTTCAGATGGTATCGTCAACGAGAAC 3219630 Query 42465 CTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTT--GAGGCGCGCTGCTTCTACGGCT 42522 ||| || ||| || || || | || ||||| || || ||||| | Sbjct 3219631 TTGGTTGAAAGATTCTCTGGTGAAGTTCA--AATTCCCGAGGCAAAGTGTTTTTACGGTT 3219688 Query 42523 TCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACA 42582 |||| || || |||||| | || | ||| ||| | ||| | |||| || | Sbjct 3219689 TCCAAATTATGATGGAGAACATCCATGCAGAGACCTACTCATTACTTATTGACACTTATA 3219748 Query 42583 TCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCA 42642 || |||| | ||| |||| ||||| | || || || | || || || || | Sbjct 3219749 TCAAGGATGCTAAGGAGGCTAACTTTTTGTTCCATGCTATTGACAATATTCCATGTATTA 3219808 Query 42643 AGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGA 42702 |||||||||| |||||||| ||| ||||| | | | | || || | ||| Sbjct 3219809 AGAAGAAGGCTGACTGGGCTCTCCGATGGATTGCTGATGATCAGTCCACTTTTGCTGAGC 3219868 Query 42703 GGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCT 42762 | || || |||||| | ||||| ||||| ||||||||||| || | || ||| |||| Sbjct 3219869 GTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCTCTGGATCATTTGCCAGTATCT 3219928 Query 42763 TCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGC 42821 ||||| | ||| || || || ||||| || || || ||||| |||||| | ||| Sbjct 3219929 TCTGGTTGAAGAAGCGTGGACTC-ATGCCTGGTCTGACGTTCTCAAACGAATTGATCTCG 3219987 Query 42822 AGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCAC 42881 | || || || |||| | || ||||| || | || ||| ||||||| | || Sbjct 3219988 CGTGATGAAGGCATGCACACCGATTTTGCTTGTTTGCTTTTC---GGCCACCT-TGTCAA 3220043 Query 42882 AAGCCCTCGAAGGAG-CGGGTCCGG--GCCATCATCACGGAGGCCGTGGAGATCGAGAAG 42938 || ||| ||| || | | | | || ||||| || ||||| || || ||| Sbjct 3220044 CAGACCT--AAGAAGTCTGTTATTGAAAAGATTATCACTGAAGCCGTTATTATTGAAAAG 3220101 Query 42939 GAGTTCCTCACGCAGTCGCTGCCCGTGT-CCCTGGTCGGCATGAACCACGACCTCATGTG 42997 |||||| | || | | || || ||| || | || ||||| | | || ||||| Sbjct 3220102 GAGTTCTTGACTGATGCTTTG-CCATGTAGTCTTTTGGGAATGAATGCCAAGCTTATGTG 3220160 Query 42998 CAAGTACATCCAGTACGTCGCCGAC-CAT--CTCCTGTGCCAGATGGGTCTCAGCCGCCT 43054 | | ||||| ||| || || ||| || | || | || | ||| ||| | Sbjct 3220161 CCAATACATTGAGTTTGTTGCTGACAGATTATTACTTTCCC---TTGGTAACAGTAAGGT 3220217 Query 43055 CTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAA 43114 || || | | |||||| || || ||||| |||||||| ||| ||||||||||| Sbjct 3220218 ATATAATGCTACCAACCCCTTTGATTTCATGGAAAACATCTCATTGTCTGGCAAGACCAA 3220277 Query 43115 CTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 ||| || |||||| | || | ||||| || Sbjct 3220278 CTTCTTTGAGAAGAGAGTGTCTGACTATCA 3220307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944339152783040