Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 >seq3 Length=2773601 Score = 107 bits (118), Expect = 2e-18 Identities = 351/542 (65%), Gaps = 14/542 (3%) Strand=Plus/Plus Query 20191 GTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATG 20250 ||||| || ||||| |||| ||||||||||| || || | | ||| ||| | Sbjct 791476 GTAGACATGAGCATCGCCCATTGTGTGAATAAAATCACCACATTCTATTCCACAAACCTT 791535 Query 20251 AGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCAT 20310 ||| | ||| | ||||| | | ||| |||||| ||||| || |||||||| ||||| Sbjct 791536 AGCGATCATCTTCGTTAACAAAGCATAAGAGGCAATATTAAATGGCACTCCCAAGCCCAT 791595 Query 20311 GTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTC------AC-----CGTCAGC-TAC 20358 || | || ||||| | |||||| |||||||| || || ||| ||| Sbjct 791596 ATCACAACTTCTTTGATATAACTGACAAGAAAGCTCTGGCTTACCATTACGGAAGCTTAC 791655 Query 20359 ATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACG-ACAAGTCCGCCGGGT 20417 |||||| ||| | || | |||||| || ||||| ||||| | || || || || || | Sbjct 791656 ATAAAACTGAGAAAATACGTGACAAGGTGGAAGAGCCAT-ATCGTTCATATCGGCGGGAT 791714 Query 20418 TCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGT 20477 |||| || |||| || |||| ||| || | || | | || ||| | | | Sbjct 791715 TCCATGCTGACATGATTATTCGTCTGTCATATGGTGTCTCCTTGATTTTTCGTATCACTT 791774 Query 20478 ACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCC 20537 | || ||| || | || | || | || |||| ||| ||| | || || | Sbjct 791775 CTGCCAGTTGATCTACTCCTTTACCAGAGTAATCAGTATCGCAATCCTCATATTTGGCGC 791834 Query 20538 CAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCA 20597 |||| || ||||| |||||||| || || ||||| | ||| ||||| | |||||| | | Sbjct 791835 CAAAATGTCTCCATTGGAAACCATACACGGGTCCAAGATCTCCCTCACGTCTGTGTTCTA 791894 Query 20598 GGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCCTGTTC 20657 | || ||| | ||| ||||| | ||||| ||||| || | || ||| | Sbjct 791895 GTCCTCGCTTGTCCAAAAACTCTCGACTTCCATTGCCATCCCAAATATGAACGCCTCTGT 791954 Query 20658 TTGAAAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGC 20717 |||||| | || |||||| ||| || | |||||| | || |||| || || | Sbjct 791955 CAGAAAGCAATTTCGAATCAGTAGACCCTTTGACAAACCATAATAGTTCTTCCAAGACAC 792014 Query 20718 CT 20719 || Sbjct 792015 CT 792016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441372777931360