Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3 136 9e-27 seq2 109 1e-18 >seq3 Length=2773601 Score = 136 bits (150), Expect = 9e-27 Identities = 148/195 (76%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| |||||||||| ||| || || |||||||| ||||| || || ||||| Sbjct 154996 TTCCTTTTGGATGTTATAGTCGGAGAGAGTACGGCCGTCTTCCAATTGCTTACCAGCGAA 154937 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||| ||||||||| ||||| || ||||| || || || || || | || || Sbjct 154936 AATCAAACGCTGTTGG---TCTGGAGGAATACCTTCCTTGTCTTGAATCTTAGTCTTGAC 154880 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||| || |||| ||| || || |||||||| || || ||||| || |||| |||||| Sbjct 154879 GTTGTCGATAGTATCAGAGGACTCGACTTCGAGAGTAATAGTCTTACCAGTCAAAGTCTT 154820 Query 288459 GACGAATATCTGCAT 288473 |||||| || ||||| Sbjct 154819 GACGAAGATTTGCAT 154805 Score = 118 bits (130), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | || | ||| ||| ||||| || || ||||||| | Sbjct 154803 CCACCACGGAGACGGAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAG 154744 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | ||| || || ||||| |||| ||||||||| ||||| Sbjct 154743 AGAGTACGGCCATCCTCGAGTTGCTTACCAGCGAAAATCAAACGCTGTTGG---TCTGGA 154687 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || || || || || | || ||||| || |||| ||| ||||| Sbjct 154686 GGAATACCCTCCTTGTCTTGAATCTTGGTCTTGACGTTATCAATAGTATCAGAGGATTCA 154627 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| || || ||||| || |||| |||||||||||| || ||||| Sbjct 154626 ACTTCGAGAGTAATAGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 154577 Score = 96.9 bits (106), Expect = 8e-15 Identities = 133/185 (72%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| || || ||||| | || || | || || || | ||| || || |||||| Sbjct 1977662 TCCTTTTGAATGTTGTAGTCAGAAAGGGTTCTGCCATCCTCGAGTTGCTTACCGGCGAAG 1977603 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||| |||||| |||||| ||||| || || || ||||| || | || ||| Sbjct 1977602 ATAAGACGTTGTTGA---TCTGGGGGAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACG 1977546 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| || || || ||||| ||||| ||||| || || || |||||| Sbjct 1977545 TTGTCAATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTACCAGTAAGGGTCTTG 1977486 Query 288460 ACGAA 288464 ||||| Sbjct 1977485 ACGAA 1977481 Score = 95.1 bits (104), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| ||| || || |||||||| | || || || || ||| Sbjct 155223 TCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCGTCTTCGAGCTGCTTACCGGCAAAG 155164 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | ||||| |||||| || || || || || ||||| || | || || Sbjct 155163 ATGAGTCTTTGTTGG---TCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGTCTTGACA 155107 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || || || ||||||||||| ||||| || || || |||||| Sbjct 155106 TTATCAATGGTGTCCGAAGACTCGACCTCGAGCGTGATAGTCTTACCAGTGAGGGTCTTG 155047 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 155046 ACGAAGATTTGCAT 155033 >seq2 Length=4956242 Score = 109 bits (120), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | || || |||||||| || ||||| | Sbjct 2345900 CCACCACGGAGACGGAGGACAAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAA 2345959 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | ||| || || || ||||||| ||| |||||| |||||| Sbjct 2345960 AGGGTACGACCATCCTCAAGTTGCTTACCAGCAAAGATCAAACGTTGTTGA---TCTGGG 2346016 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || || ||||| || | || || || || |||| ||| || || Sbjct 2346017 GGAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATAGTGTCGGAAGACTCA 2346076 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| ||||| || ||||||||||| || ||||| Sbjct 2346077 ACCTCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACGAAAATTTGCAT 2346126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179654339542712