Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq3 136 9e-27
seq2 109 1e-18
>seq3
Length=2773601
Score = 136 bits (150), Expect = 9e-27
Identities = 148/195 (76%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| |||||||| |||||||||| ||| || || |||||||| ||||| || || |||||
Sbjct 154996 TTCCTTTTGGATGTTATAGTCGGAGAGAGTACGGCCGTCTTCCAATTGCTTACCAGCGAA 154937
Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398
|||| ||||||||| ||||| || ||||| || || || || || | || ||
Sbjct 154936 AATCAAACGCTGTTGG---TCTGGAGGAATACCTTCCTTGTCTTGAATCTTAGTCTTGAC 154880
Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
||| || |||| ||| || || |||||||| || || ||||| || |||| ||||||
Sbjct 154879 GTTGTCGATAGTATCAGAGGACTCGACTTCGAGAGTAATAGTCTTACCAGTCAAAGTCTT 154820
Query 288459 GACGAATATCTGCAT 288473
|||||| || |||||
Sbjct 154819 GACGAAGATTTGCAT 154805
Score = 118 bits (130), Expect = 3e-21
Identities = 165/230 (72%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || || | || | ||| ||| ||||| || || ||||||| |
Sbjct 154803 CCACCACGGAGACGGAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAG 154744
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || || || | ||| || || ||||| |||| ||||||||| |||||
Sbjct 154743 AGAGTACGGCCATCCTCGAGTTGCTTACCAGCGAAAATCAAACGCTGTTGG---TCTGGA 154687
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || || || || || || || | || ||||| || |||| ||| |||||
Sbjct 154686 GGAATACCCTCCTTGTCTTGAATCTTGGTCTTGACGTTATCAATAGTATCAGAGGATTCA 154627
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|||||||| || || ||||| || |||| |||||||||||| || |||||
Sbjct 154626 ACTTCGAGAGTAATAGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 154577
Score = 96.9 bits (106), Expect = 8e-15
Identities = 133/185 (72%), Gaps = 6/185 (3%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| ||||| || || ||||| | || || | || || || | ||| || || ||||||
Sbjct 1977662 TCCTTTTGAATGTTGTAGTCAGAAAGGGTTCTGCCATCCTCGAGTTGCTTACCGGCGAAG 1977603
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|| ||||| |||||| |||||| ||||| || || || ||||| || | || |||
Sbjct 1977602 ATAAGACGTTGTTGA---TCTGGGGGAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACG 1977546
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | ||| || || || ||||| ||||| ||||| || || || ||||||
Sbjct 1977545 TTGTCAATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTACCAGTAAGGGTCTTG 1977486
Query 288460 ACGAA 288464
|||||
Sbjct 1977485 ACGAA 1977481
Score = 95.1 bits (104), Expect = 3e-14
Identities = 138/194 (71%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||||| ||| || || |||||||| | || || || || |||
Sbjct 155223 TCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCGTCTTCGAGCTGCTTACCGGCAAAG 155164
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|| || | ||||| |||||| || || || || || ||||| || | || ||
Sbjct 155163 ATGAGTCTTTGTTGG---TCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGTCTTGACA 155107
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | || || || || ||||||||||| ||||| || || || ||||||
Sbjct 155106 TTATCAATGGTGTCCGAAGACTCGACCTCGAGCGTGATAGTCTTACCAGTGAGGGTCTTG 155047
Query 288460 ACGAATATCTGCAT 288473
||||| || |||||
Sbjct 155046 ACGAAGATTTGCAT 155033
>seq2
Length=4956242
Score = 109 bits (120), Expect = 1e-18
Identities = 163/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || || || || | || || |||||||| || ||||| |
Sbjct 2345900 CCACCACGGAGACGGAGGACAAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAA 2345959
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || || || | ||| || || || ||||||| ||| |||||| ||||||
Sbjct 2345960 AGGGTACGACCATCCTCAAGTTGCTTACCAGCAAAGATCAAACGTTGTTGA---TCTGGG 2346016
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
||||| || || || ||||| || | || || || || |||| ||| || ||
Sbjct 2346017 GGAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATAGTGTCGGAAGACTCA 2346076
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || ||||| ||||| ||||| || ||||||||||| || |||||
Sbjct 2346077 ACCTCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACGAAAATTTGCAT 2346126
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179654339542712
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |