Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1 125 9e-24 seq2 109 7e-19 >seq1 Length=5930846 Score = 125 bits (138), Expect = 9e-24 Identities = 555/862 (64%), Gaps = 19/862 (2%) Strand=Plus/Plus Query 114476 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACAC 114535 || ||||| |||||||||| |||||| | || | ||||| ||||| ||||| || Sbjct 4966724 GATGCCAGGTTACACACAGCGGTCTCCTGTTTGGACGAGTACTGGATAATCTCCGTGCAT 4966783 Query 114536 AAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 114595 | ||| ||| ||||| || || | || ||||||||||| ||| ||||||| | ||| Sbjct 4966784 AGATTGGAAGATTTAATCGTACCAAGATTATTTTGATTTGATTTTCTGTTACAGGAATCT 4966843 Query 114596 TTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-C 114654 |||||||||||| |||| || || ||||| ||| | || | ||| || ||||| | Sbjct 4966844 TTGTAAAGCATGAATGGAGTTCCAGTCTCGACTTGAGTCTCTAAAATGGCAAACCAGAGC 4966903 Query 114655 ATCGGCGGCTGGCACAGTGGCG---TTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAG 114711 || | |||| || | ||| || || || | || || || |||| | Sbjct 4966904 TTCTG-GGCTCTGAC-CTTGCGAACATG--TCTGTTTTCTTTTTCATATCTTTTGTACAA 4966959 Query 114712 GGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAG 114771 | ||| || || ||||| | | || || | || || || | ||| || | || | Sbjct 4966960 AGTTTCGAATTCATCACCGTAGACGTCAGATAAACCAGGAGCTTCATCAGGTGAAAATAA 4967019 Query 114772 AGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGA 114831 |||||| | || |||||||| | || |||||||| ||||| | Sbjct 4967020 GCACCATTCTTGGTTGTTGCTTACCTTTTTCATGAACAAATCAGGGATCCAAAGAGCATA 4967079 Query 114832 GAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTC 114891 || | || ||| | |||||| | || ||||| || ||||| ||||| || Sbjct 4967080 AAACAAGTCTCGAGCTCTTAATTCTTCTTTGCCGTGATTTTTTCGTAACTCTAAAAACTC 4967139 Query 114892 CATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-ACC---CCTTACGACGAC 114947 | ||||| |||||| ||||||| ||| | || | | ||| ||| | || Sbjct 4967140 TAATATATCACTGTGCCAAGGTTCCAAGTAAATAGCAAAAGCACCTGGTCTTTTG-TTAC 4967198 Query 114948 CAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCAT 115007 || |||| | ||||||||| || || ||||| || | ||||| || | || |||| Sbjct 4967199 CACCCTGATCTACATACCTGGCAGTATTGTTAAAAACTCTTAGCATCGGCACAATTCCAT 4967258 Query 115008 CAGATTGGCCATTTGTCCCCCGAATACGAG-ACTTATTGGCTCTGACATCATGGATGTGC 115066 || |||||| |||| ||| || || | | | | || || ||| ||||| Sbjct 4967259 TGGAGCTGCCATTACTCCCAGCAATGTAAGCACCCGTCGAC-CGGATATTATGAATGTGG 4967317 Query 115067 ATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATC 115126 | |||||| || ||||| |||||||| ||||| || | || | |||| || Sbjct 4967318 AGACCAATCCCACCTGCAGTTTTTGAGATCATAGCGCAGTCTTTTAGGGTATCGTAAATG 4967377 Query 115127 CCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGT 115186 || || || || || | || | || | | ||||||| ||| | ||| || | || Sbjct 4967378 CCTTCTATGGAATCCTCTTTCATAGCTACCAAGAAGCAGGACGATAATTGAGGATTAGGC 4967437 Query 115187 GTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATA-CCTTGGGACATCTTATC 115245 || |||| |||||| || ||||||| ||| ||| |||| ||| || ||||| | || Sbjct 4967438 GTGCCAGAGTTGAATAGTGTTGGTGACGCATGGGTGAA-ATATTTTTCCGACAT-TAATT 4967495 Query 115246 G-TAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAA 115304 | || ||||| | ||| || ||| || |||||||| | || || | ||| | Sbjct 4967496 GATATGTCTCGATGACCCTATCTATATCTCTGCCATGAATACCCACCGCCACTCTCATTA 4967555 Query 115305 ACATGTATTGGGGTGTTTCCAT 115326 |||| | ||| || |||| || Sbjct 4967556 ACATCTGTTGCGGCCTTTCAAT 4967577 Score = 107 bits (118), Expect = 2e-18 Identities = 300/458 (66%), Gaps = 8/458 (2%) Strand=Plus/Plus Query 113565 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 113624 |||||||||| ||| | || || | ||| | |||||||| || || || | || Sbjct 4965777 TGAACTGAATAGGTGCAGAAGCTGCTTTCGTTCGTAAATAGTACATTCCTGTTTTTAACC 4965836 Query 113625 CCTGCTTCCAGGCATACATATGCAT---CGAG-GACAACTTGGAGAGTGTTGGACTTTCC 113680 ||| ||||||| |||| | |||||| || | | | || || | ||| ||| | Sbjct 4965837 CCTTCTTCCAGCCATAAAAATGCATACTCGTGAGTTTTCCTGCAG----TAGGATTTTTC 4965892 Query 113681 ATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCA 113740 ||||| | |||||||| || || ||||| || | || ||||| || || ||||| ||| Sbjct 4965893 ATGAAAATATTCATACTCTGAGACTGATCAATATAACGGCCACGGTCAGCTGCCATGTCA 4965952 Query 113741 ATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGG 113800 || | | |||| | | |||||| |||| | || | | || | || | || Sbjct 4965953 ATAATAACCTTTTGGCTCAATTCCCAGGCAGTCTTATATATATCTTTCAGCTCCTTGGGA 4966012 Query 113801 ATATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGAGATCCTTCATATCCTTT 113860 || || ||| ||||| || |||||| || | | | || | || | | ||||| || Sbjct 4966013 ATCTCGGGGATGTTTTGAATAGAGCCATCCTCGCTAATAATCATATTCCTGATATCATTA 4966072 Query 113861 GACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCA 113920 ||| || | || | || |||| ||| || | || |||||||| || ||| Sbjct 4966073 TTCCACAGCCTAAGTTGCACAAGGTCCTTCACTAGGTACTCGTTGACAACTTGGAATTCA 4966132 Query 113921 CCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTA 113980 || | || || ||| ||||||||| | ||| ||| |||||||| ||||| | Sbjct 4966133 CCAGAAAGTACACGCCTCGCATAGATATTCGATGTGATTGGTTCAAAGCATTCATTAAAA 4966192 Query 113981 CCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGC 114018 || | ||||| | || || ||||||||||| ||||| Sbjct 4966193 CCAAGAATTTGCGATGTTGAAGCTGTGGGCATTGGTGC 4966230 >seq2 Length=4956242 Score = 109 bits (120), Expect = 7e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| | || || ||||| ||||| | ||| || ||||| ||| || Sbjct 3220016 GCAAAATCGGTGTGCATGCCTTCATCACGCGAGATCAATTCGTTTGAGAACGTCAGACCA 3219957 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 |||||||| || ||||||||||||||||| || |||||| || ||||||||||| Sbjct 3219956 GGCATGAGTCCACGCTTCTTCAACCAGAAGATACTGGCAAATGATCCAGAGAAGAAGATA 3219897 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA 126204 ||||| || || || |||| ||||||||||||||| Sbjct 3219896 CCCTCAACGGCAGCAAAGGCAACGAGACGCTCAGCAAA 3219859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353570132320