Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq3 95.1 1e-14
>seq3
Length=2773601
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || | ||||| || |||| || ||||||||||| || ||
Sbjct 155224 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCGTCTTCGAGCTGCTTACCGGCAAA 155165
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||||||| || ||||| | || | || ||||||||| ||| || |||| |
Sbjct 155164 GATGAGTCTTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGTCTTGACATT 155105
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | ||||| || || || |||| |||||| || || || || || ||||| ||
Sbjct 155104 ATCAATGGTGTCCGAAGACTCGACCTCGAGCGTGATAGTCTTACCAGTGAGGGTCTTGAC 155045
Query 42197 AAAGATTTGCAT 42208
|||||||||||
Sbjct 155044 GAAGATTTGCAT 155033
Score = 89.7 bits (98), Expect = 6e-13
Identities = 137/193 (71%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
|||||||||||||||||||||| || || | | || |||| ||||||||||| ||
Sbjct 154083 TCCTTTTGAATATTGTAATCAGACAAGGTTCTGCCATCTTCTAATTGCTTACCAGCAAAA 154024
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 42136
|| |||| || ||||| | || | | ||||||| | ||| | || || |||| |
Sbjct 154023 ATAAGTCTTTGTTGGTCTGGAGGAATACCTTCCTTGT-CTTGAATCTTGGTCTTGACATT 153965
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | || || || || || || | |||||||| || || || || ||||||||
Sbjct 153964 GTCGATAGTATCAGAGGACTCAACCTCAAGAGTGATGGTCTTACCAGTGAGGGTCTTTAC 153905
Query 42197 AAAGATTTGCATT 42209
||||||||||||
Sbjct 153904 GAAGATTTGCATT 153892
Score = 82.4 bits (90), Expect = 8e-11
Identities = 135/192 (70%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
||||||||||| ||||| || | ||||| || | || || || ||||||||||||||
Sbjct 154767 TCCTTTTGAATGTTGTAGTCGGAGAGAGTACGGCCATCCTCGAGTTGCTTACCAGCGAAA 154708
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 42136
|| | ||||| ||||| | || | | |||||||| | ||| | || || |||| |
Sbjct 154707 ATCAAACGCTGTTGGTCTGGAGGAATACCCTCCTTGT-CTTGAATCTTGGTCTTGACGTT 154649
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | || || ||||| || |||| || || || || || || | ||||| ||
Sbjct 154648 ATCAATAGTATCAGAGGATTCAACTTCGAGAGTAATAGTCTTACCAGTCAAAGTCTTGAC 154589
Query 42197 AAAGATTTGCAT 42208
|||||||||||
Sbjct 154588 GAAGATTTGCAT 154577
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543212772839360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |