Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq3 116 4e-21 >seq3 Length=2773601 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| ||||||||||||||||| | | ||| | | ||||| | ||||| || Sbjct 154317 GTGGATTCCTTTTGAATGTTGTAATCAGACAAGGTTCTGCCATCTTCTAATTGCTTACCA 154258 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| || | || ||||| |||||||| ||||| || ||||| ||||| ||| Sbjct 154257 GCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATTTTGGTCTTA 154198 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | |||||| || || ||||| | ||| | |||||| || || | || Sbjct 154197 ACATTATCAATAGTATCAGAGGACTCAACTTCAAGAGTAATGGTCTTACCAGTGAGGGTC 154138 Query 64427 TTTACGAAAATTTGCAT 64443 |||||||| |||||||| Sbjct 154137 TTTACGAAGATTTGCAT 154121 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| |||||||||||||| || | || || || | || || || ||||| || Sbjct 154773 GTGGATTCCTTTTGAATGTTGTAGTCGGAGAGAGTACGGCCATCCTCGAGTTGCTTACCA 154714 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| | ||||| ||||| |||||||| || || || ||||| || || ||| Sbjct 154713 GCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCCTCCTTGTCTTGAATCTTGGTCTTG 154654 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | |||||| || || ||||| | ||| | ||||| || |||||||| Sbjct 154653 ACGTTATCAATAGTATCAGAGGATTCAACTTCGAGAGTAATAGTCTTACCAGTCAAAGTC 154594 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| |||||||| Sbjct 154593 TTGACGAAGATTTGCAT 154577 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || |||| |||| || ||||| |||||||||||||| || | | || || | || Sbjct 154560 AGAACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCGGAAAGAGTACGACCATCC 154501 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || ||||| || ||| | || || | || ||||| |||||||| || || || ||| Sbjct 154500 TCGAGTTGCTTACCAGCAAAGATAAGTCTTTGTTGGTCTGGAGGAATACCCTCCTTGTCT 154441 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | |||||| || || ||||| | || | |||| Sbjct 154440 TGGATCTTAGTCTTAACATTATCAATAGTATCAGAGGACTCGACTTCGAGGGTGATGGTC 154381 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || ||||| || || || || |||||||| Sbjct 154380 TTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 154349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644775017760