Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq3 107 2e-18
seq2 87.8 2e-12
>seq3
Length=2773601
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | |||||| || | | || |||||||||||||||||||||
Sbjct 154575 CCACCACGGAGACGGAGAACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCGGAA 154516
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| |||||| ||||||||||| ||||| | | |||| || | |||||||| |||||
Sbjct 154515 AGAGTACGACCATCCTCGAGTTGCTTACCAGCAAAGATAAGTCTTTGTTGGTCTGGAGGA 154456
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566
||||| || ||||| || | || || |||| | || | || || | ||||| ||
Sbjct 154455 ATACCCTCCTTGTC-TTGGATCTTAGTCTTAACATTATCAATAGTATCAGAGGACTCGAC 154397
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| || | || || ||||||| || || ||||| || |||||
Sbjct 154396 TTCGAGGGTGATGGTCTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 154349
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| || | ||| | || || || | | | |||||||| || ||||||||||||
Sbjct 155259 CCGCCACGAAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 155200
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| |||||| ||| ||||| || ||||||| | |||| || | |||||||| || ||
Sbjct 155199 AGAGTACGACCGTCTTCGAGCTGCTTACCGGCAAAGATGAGTCTTTGTTGGTCTGGGGGA 155140
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| || || ||||| ||| || || | | || | |||||| | ||||| |||
Sbjct 155139 ATGCCCTCCTTGTCTTGGATCTTGGTCTTGACATTATCAATGGTGTCCGAAGACTCGACC 155080
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| ||| | || |||||||| || || || || || || |||||
Sbjct 155079 TCGAGCGTGATAGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 155033
Score = 102 bits (112), Expect = 8e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | ||||| || | | || |||||||||||||||||||||
Sbjct 154803 CCACCACGGAGACGGAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAG 154744
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| |||||| ||||||||||| ||||| | | || | |||||||||||| |||||
Sbjct 154743 AGAGTACGGCCATCCTCGAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGA 154684
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
||||| || ||||| ||| | || || || | | || | || || | || || ||
Sbjct 154683 ATACCCTCCTTGTC-TTGAATCTTGGTCTTGACGTTATCAATAGTATCAGAGGATTCAAC 154625
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| || | || |||||||||| ||| || || || || |||||
Sbjct 154624 TTCGAGAGTAATAGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 154577
Score = 100 bits (110), Expect = 3e-16
Identities = 159/222 (72%), Gaps = 6/222 (3%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| |||| |||||| | || | || | | |||||||||||||||||||||||
Sbjct 1977698 CCACCTCTCAAACGGAGGACAAGGTGGAGAGTCGACTCCTTTTGAATGTTGTAGTCAGAA 1977639
Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| || | || | ||||||||||| ||||||| |||| ||||| ||||| || || ||
Sbjct 1977638 AGGGTTCTGCCA-TCCTCGAGTTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGGGG 1977580
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564
|| || || ||||| || | || || || | ||| || | |||||||| |||||
Sbjct 1977579 AATTCCCTCCTTGTC-TTGGATCTTGGTCTTGACGTTG-TCAATGGTGTCGGAAGACTCG 1977522
Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAA 138606
||||||| || | || |||||||| || || || || |||
Sbjct 1977521 ACCTCGAGGGTGATGGTCTTACCAGTAAGGGTCTTGACGAAA 1977480
Score = 96.9 bits (106), Expect = 3e-15
Identities = 141/196 (72%), Gaps = 4/196 (2%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| |||||||| ||||| |||||| | |||||| ||| || | ||| ||||| |
Sbjct 154998 GATTCCTTTTGGATGTTATAGTCGGAGAGAGTACGGCCGTCTTCCAATTGCTTACCAGCG 154939
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
| || | |||||||||||| ||||| |||||||| ||||| ||| | || || || |
Sbjct 154938 AAAATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTC-TTGAATCTTAGTCTTGAC 154880
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
||| || | || || | ||||| || |||| || | || |||||||||| ||| |
Sbjct 154879 GTTG-TCGATAGTATCAGAGGACTCGACTTCGAGAGTAATAGTCTTACCAGTCAAAGTCT 154821
Query 138599 TTACAAAAATCTGCAT 138614
| || || || |||||
Sbjct 154820 TGACGAAGATTTGCAT 154805
Score = 84.2 bits (92), Expect = 2e-11
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | ||| || || | | || ||||||||||||||||| || |
Sbjct 154347 CCACCACGAAGACGAAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAC 154288
Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| || | || | || || | ||| ||||| | | | || || | |||||||| |||||
Sbjct 154287 AAGGTTCTGCCA-TCTTCTAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGG 154229
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCA 138565
|||||||| ||||| ||| |||| || |||| | || | || || | ||||| |
Sbjct 154228 AATACCTTCCTTGTC-TTGAATTTTGGTCTTAACATTATCAATAGTATCAGAGGACTCAA 154170
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
| || | || | || |||||||| || || ||||| || || |||||
Sbjct 154169 CTTCAAGAGTAATGGTCTTACCAGTGAGGGTCTTTACGAAGATTTGCAT 154121
>seq2
Length=4956242
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/195 (71%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||||||||| ||||||||||| | ||||| ||||| ||||| ||||| | |
Sbjct 2345933 GACTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCCTCAAGTTGCTTACCAGCA 2345992
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAA 138539
|||| | ||| ||||| || || || || || || ||||| ||| || | || |
Sbjct 2345993 AAGATCAAACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACA 2346052
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | ||||||| ||||| ||||| | || | || ||||| || || || ||
Sbjct 2346053 TTG-TCGATAGTGTCGGAAGACTCAACCTCAAGGGTGATAGTCTTACCGGTAAGGGTCTT 2346111
Query 138600 TACAAAAATCTGCAT 138614
|| ||||| |||||
Sbjct 2346112 GACGAAAATTTGCAT 2346126
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496262375186880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |