Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 seq2 87.8 2e-12 >seq3 Length=2773601 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | |||||| || | | || ||||||||||||||||||||| Sbjct 154575 CCACCACGGAGACGGAGAACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCGGAA 154516 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||||||||| ||||| | | |||| || | |||||||| ||||| Sbjct 154515 AGAGTACGACCATCCTCGAGTTGCTTACCAGCAAAGATAAGTCTTTGTTGGTCTGGAGGA 154456 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| || | || || |||| | || | || || | ||||| || Sbjct 154455 ATACCCTCCTTGTC-TTGGATCTTAGTCTTAACATTATCAATAGTATCAGAGGACTCGAC 154397 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || ||||||| || || ||||| || ||||| Sbjct 154396 TTCGAGGGTGATGGTCTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 154349 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || || || | | | |||||||| || |||||||||||| Sbjct 155259 CCGCCACGAAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 155200 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||| ||||| || ||||||| | |||| || | |||||||| || || Sbjct 155199 AGAGTACGACCGTCTTCGAGCTGCTTACCGGCAAAGATGAGTCTTTGTTGGTCTGGGGGA 155140 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||| | ||||| ||| Sbjct 155139 ATGCCCTCCTTGTCTTGGATCTTGGTCTTGACATTATCAATGGTGTCCGAAGACTCGACC 155080 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| ||| | || |||||||| || || || || || || ||||| Sbjct 155079 TCGAGCGTGATAGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 155033 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||||| || | | || ||||||||||||||||||||| Sbjct 154803 CCACCACGGAGACGGAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAG 154744 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||||||||| ||||| | | || | |||||||||||| ||||| Sbjct 154743 AGAGTACGGCCATCCTCGAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGA 154684 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| | || || || | | || | || || | || || || Sbjct 154683 ATACCCTCCTTGTC-TTGAATCTTGGTCTTGACGTTATCAATAGTATCAGAGGATTCAAC 154625 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || |||||||||| ||| || || || || ||||| Sbjct 154624 TTCGAGAGTAATAGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 154577 Score = 100 bits (110), Expect = 3e-16 Identities = 159/222 (72%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| |||||| | || | || | | ||||||||||||||||||||||| Sbjct 1977698 CCACCTCTCAAACGGAGGACAAGGTGGAGAGTCGACTCCTTTTGAATGTTGTAGTCAGAA 1977639 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | || | ||||||||||| ||||||| |||| ||||| ||||| || || || Sbjct 1977638 AGGGTTCTGCCA-TCCTCGAGTTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGGGG 1977580 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 || || || ||||| || | || || || | ||| || | |||||||| ||||| Sbjct 1977579 AATTCCCTCCTTGTC-TTGGATCTTGGTCTTGACGTTG-TCAATGGTGTCGGAAGACTCG 1977522 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAA 138606 ||||||| || | || |||||||| || || || || ||| Sbjct 1977521 ACCTCGAGGGTGATGGTCTTACCAGTAAGGGTCTTGACGAAA 1977480 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| ||||| |||||| | |||||| ||| || | ||| ||||| | Sbjct 154998 GATTCCTTTTGGATGTTATAGTCGGAGAGAGTACGGCCGTCTTCCAATTGCTTACCAGCG 154939 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 | || | |||||||||||| ||||| |||||||| ||||| ||| | || || || | Sbjct 154938 AAAATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTC-TTGAATCTTAGTCTTGAC 154880 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | || || | ||||| || |||| || | || |||||||||| ||| | Sbjct 154879 GTTG-TCGATAGTATCAGAGGACTCGACTTCGAGAGTAATAGTCTTACCAGTCAAAGTCT 154821 Query 138599 TTACAAAAATCTGCAT 138614 | || || || ||||| Sbjct 154820 TGACGAAGATTTGCAT 154805 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| || || | | || ||||||||||||||||| || | Sbjct 154347 CCACCACGAAGACGAAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAC 154288 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | || | || || | ||| ||||| | | | || || | |||||||| ||||| Sbjct 154287 AAGGTTCTGCCA-TCTTCTAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGG 154229 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| ||| |||| || |||| | || | || || | ||||| | Sbjct 154228 AATACCTTCCTTGTC-TTGAATTTTGGTCTTAACATTATCAATAGTATCAGAGGACTCAA 154170 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | || |||||||| || || ||||| || || ||||| Sbjct 154169 CTTCAAGAGTAATGGTCTTACCAGTGAGGGTCTTTACGAAGATTTGCAT 154121 >seq2 Length=4956242 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| ||||||||||| | ||||| ||||| ||||| ||||| | | Sbjct 2345933 GACTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCCTCAAGTTGCTTACCAGCA 2345992 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAA 138539 |||| | ||| ||||| || || || || || || ||||| ||| || | || | Sbjct 2345993 AAGATCAAACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACA 2346052 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||||||| ||||| ||||| | || | || ||||| || || || || Sbjct 2346053 TTG-TCGATAGTGTCGGAAGACTCAACCTCAAGGGTGATAGTCTTACCGGTAAGGGTCTT 2346111 Query 138600 TACAAAAATCTGCAT 138614 || ||||| ||||| Sbjct 2346112 GACGAAAATTTGCAT 2346126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262375186880