Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq3 118 8e-22
seq2 87.8 1e-12
>seq3
Length=2773601
Score = 118 bits (130), Expect = 8e-22
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027
|| || || || ||||| || ||||| ||||| || ||| |||| | | |||||||
Sbjct 155013 ACCAAGTGGAGAGTAGATTCCTTTTGGATGTTATAGTCGGAGAGAGTACGGCCGTCTTCC 154954
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
||||| || |||||| | ||||||||||||||||| ||||| ||||||||||| |
Sbjct 154953 AATTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGA 154894
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
|| || | || || | || |||||||| || || || | ||||| || |||
Sbjct 154893 ATCTTAGTCTTGACGTTGTCGATAGTATCAGAGGACTCGACTTCGAGAGTAATAGTCTTA 154834
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| |||| ||| || || || |||||||||
Sbjct 154833 CCAGTCAAAGTCTTGACGAAGATTTGCATA 154804
Score = 113 bits (124), Expect = 3e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027
||||| || || || || || ||||| |||||||| ||| |||| | | | || ||
Sbjct 154785 ACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAGAGAGTACGGCCATCCTCG 154726
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
| ||| || |||||| | ||||||||||||||||| ||||| || |||||||| |
Sbjct 154725 AGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCCTCCTTGTCTTGA 154666
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
|| ||| | || || | || |||||||| ||| || || | ||||| || |||
Sbjct 154665 ATCTTGGTCTTGACGTTATCAATAGTATCAGAGGATTCAACTTCGAGAGTAATAGTCTTA 154606
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| |||| ||| || || || |||||||||
Sbjct 154605 CCAGTCAAAGTCTTGACGAAGATTTGCATA 154576
Score = 109 bits (120), Expect = 4e-19
Identities = 153/213 (72%), Gaps = 4/213 (2%)
Strand=Plus/Minus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGTCT 15024
||| || || || || || || ||||| ||||||||||| || || |||| | |||
Sbjct 154330 AACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCA--GACAAGGTTCTGCCATCT 154273
Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084
|||||||| || ||||| | || | | |||||||| ||||| |||||||||||
Sbjct 154272 TCTAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCT 154213
Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144
||||||| | || ||| | || |||||||| || || || | ||||||||
Sbjct 154212 TGAATTTTGGTCTTAACATTATCAATAGTATCAGAGGACTCAACTTCAAGAGTAATGGTC 154153
Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
||||| || || || ||||| || |||||||||
Sbjct 154152 TTACCAGTGAGGGTCTTTACGAAGATTTGCATA 154120
Score = 102 bits (112), Expect = 6e-17
Identities = 151/212 (71%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGTCT 15024
||| || ||||| ||||| || ||||| || |||||||| || || |||| | |||
Sbjct 154102 AACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCA--GACAAGGTTCTGCCATCT 154045
Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084
|||||||| || ||||| | || | | |||||||| ||||| |||||||||||
Sbjct 154044 TCTAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCT 153985
Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144
||| ||| | || ||| | || |||||||| || || || | || |||||
Sbjct 153984 TGAATCTTGGTCTTGACATTGTCGATAGTATCAGAGGACTCAACCTCAAGAGTGATGGTC 153925
Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
||||| || || || ||||| || ||||||||
Sbjct 153924 TTACCAGTGAGGGTCTTTACGAAGATTTGCAT 153893
>seq2
Length=4956242
Score = 87.8 bits (96), Expect = 1e-12
Identities = 148/213 (69%), Gaps = 1/213 (0%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
|| || ||||| || ||||| |||||||| || || | | | || || | |||
Sbjct 2345924 TGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCCTCAAGTTGC 2345983
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| ||||| | |||||||| ||||| || |||||||| |||||||| || |||
Sbjct 2345984 TTACCAGCAAAGATCAAACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTTG 2346043
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
| || ||| | || ||||| ||| | || || || | ||| || || ||||| ||
Sbjct 2346044 GTCTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCAAGGGTGATAGTCTTACCGGTA 2346103
Query 15154 AGAGTTTTTACAAAAATTTGCATATTTGAAATA 15186
|| || || || ||||||||||| || |||||
Sbjct 2346104 AGGGTCTTGACGAAAATTTGCATCGTT-AAATA 2346135
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357391982577140
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |