Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq3 113 4e-20 seq2 89.7 5e-13 >seq3 Length=2773601 Score = 113 bits (124), Expect = 4e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||||||||| ||||| ||| || || || |||||||| Sbjct 155007 TGGAGAGTAGATTCCTTTTGGATGTTATAGTCGGAGAGAGTACGGCCGTCTTCCAATTGC 154948 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | ||||| || || ||||| || ||||| ||||| || |||||||| || Sbjct 154947 TTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATCTTA 154888 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | || || || ||||||||||||||||||| || || || || Sbjct 154887 GTCTTGA-CGTTGTCGATAGTATCAGAGGACTCGACTTCGAGAGTAATAGTCTTACCAGT 154829 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 | ||| || || || |||||||| Sbjct 154828 CAAAGTCTTGACGAAGATTTGCAT 154805 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||||||||| || || ||||| | |||| | ||| || ||||| Sbjct 154323 TGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGACAAGGTTCTGCCATCTTCTAATTGC 154264 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | || | || ||| ||||| || ||||| ||||| || ||||||| |||| Sbjct 154263 TTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAA-TTTT 154205 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || | | | | || | || || || ||||| ||||| ||||||| || || || || Sbjct 154204 GGTCTTAACATTATCAATAGTATCAGAGGACTCAACTTCAAGAGTAATGGTCTTACCAGT 154145 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| || |||||||| Sbjct 154144 GAGGGTCTTTACGAAGATTTGCAT 154121 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||||||||| ||||| ||||| | |||| | ||| || ||||| Sbjct 154095 TGAAGAGTAGATTCCTTTTGAATATTGTAATCAGACAAGGTTCTGCCATCTTCTAATTGC 154036 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | || | || ||| ||||| || ||||| ||||| || |||||||| || Sbjct 154035 TTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATCTTG 153976 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| || | || || || ||||| || || ||||| | || || || || Sbjct 153975 GTCTTGACATTGTCGATAGTATCAGAGGACTCAACCTCAAGAGTGATGGTCTTACCAGTG 153916 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| || |||||||| Sbjct 153915 AGGGTCTTTACGAAGATTTGCAT 153893 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | |||| || || || ||||||||||| || || || ||| Sbjct 154806 ATACCACCACGGAGACGGAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCG 154747 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || ||| || | ||| || || ||| | ||||| || || ||||| || Sbjct 154746 GAGAGAGTACGGCCATCCTCGAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGA 154687 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || || |||||||| || |||| || | || | || || || || || Sbjct 154686 GGAATACCCTCCTTGTCTTGAATCTTGGTCTTGA-CGTTATCAATAGTATCAGAGGATTC 154628 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||||||| || || || || | ||| || || || |||||||| Sbjct 154627 AACTTCGAGAGTAATAGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 154577 >seq2 Length=4956242 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || || || || || || ||||||||||| || || || Sbjct 2345900 CCACCACGGAGACGGAGGACAAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAA 2345959 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| || | ||| || || || | ||||| ||||| || || || ||| Sbjct 2345960 AGGGTACGACCATCCTCAAGTTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGGGGA 2346019 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || || ||||| || || |||| || | |||||||||||||| || Sbjct 2346020 ATTCCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATAGTGTCGGAAGACTCAACC 2346079 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCG 45342 || || || | || || ||||| || || || || ||||||||||||| Sbjct 2346080 TCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACGAAAATTTGCATCG 2346128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003177399840