Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq3 113 4e-20
seq2 89.7 5e-13
>seq3
Length=2773601
Score = 113 bits (124), Expect = 4e-20
Identities = 149/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| || || |||||||||||||| ||||| ||| || || || ||||||||
Sbjct 155007 TGGAGAGTAGATTCCTTTTGGATGTTATAGTCGGAGAGAGTACGGCCGTCTTCCAATTGC 154948
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
|| || ||| | ||||| || || ||||| || ||||| ||||| || |||||||| ||
Sbjct 154947 TTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATCTTA 154888
Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316
|||| || | || | || || || ||||||||||||||||||| || || || ||
Sbjct 154887 GTCTTGA-CGTTGTCGATAGTATCAGAGGACTCGACTTCGAGAGTAATAGTCTTACCAGT 154829
Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340
| ||| || || || ||||||||
Sbjct 154828 CAAAGTCTTGACGAAGATTTGCAT 154805
Score = 100 bits (110), Expect = 3e-16
Identities = 146/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| || || ||||||||||| || || ||||| | |||| | ||| || |||||
Sbjct 154323 TGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGACAAGGTTCTGCCATCTTCTAATTGC 154264
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
|| || || | || | || ||| ||||| || ||||| ||||| || ||||||| ||||
Sbjct 154263 TTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAA-TTTT 154205
Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316
|| | | | | || | || || || ||||| ||||| ||||||| || || || ||
Sbjct 154204 GGTCTTAACATTATCAATAGTATCAGAGGACTCAACTTCAAGAGTAATGGTCTTACCAGT 154145
Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340
|| || ||||| || ||||||||
Sbjct 154144 GAGGGTCTTTACGAAGATTTGCAT 154121
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| || || ||||||||||| ||||| ||||| | |||| | ||| || |||||
Sbjct 154095 TGAAGAGTAGATTCCTTTTGAATATTGTAATCAGACAAGGTTCTGCCATCTTCTAATTGC 154036
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
|| || || | || | || ||| ||||| || ||||| ||||| || |||||||| ||
Sbjct 154035 TTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATCTTG 153976
Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317
|||| || | || || || ||||| || || ||||| | || || || ||
Sbjct 153975 GTCTTGACATTGTCGATAGTATCAGAGGACTCAACCTCAAGAGTGATGGTCTTACCAGTG 153916
Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340
|| || ||||| || ||||||||
Sbjct 153915 AGGGTCTTTACGAAGATTTGCAT 153893
Score = 89.7 bits (98), Expect = 5e-13
Identities = 160/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | | |||| || || || ||||||||||| || || || |||
Sbjct 154806 ATACCACCACGGAGACGGAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCG 154747
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|| || ||| || | ||| || || ||| | ||||| || || ||||| ||
Sbjct 154746 GAGAGAGTACGGCCATCCTCGAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGA 154687
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
||||| || || || |||||||| || |||| || | || | || || || || ||
Sbjct 154686 GGAATACCCTCCTTGTCTTGAATCTTGGTCTTGA-CGTTATCAATAGTATCAGAGGATTC 154628
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||||||||||| || || || || | ||| || || || ||||||||
Sbjct 154627 AACTTCGAGAGTAATAGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 154577
>seq2
Length=4956242
Score = 89.7 bits (98), Expect = 5e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| || ||||| | | || || || || || || ||||||||||| || || ||
Sbjct 2345900 CCACCACGGAGACGGAGGACAAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAA 2345959
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| ||| | ||| || | ||| || || || | ||||| ||||| || || || |||
Sbjct 2345960 AGGGTACGACCATCCTCAAGTTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGGGGA 2346019
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
|| || || || ||||| || || |||| || | |||||||||||||| ||
Sbjct 2346020 ATTCCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATAGTGTCGGAAGACTCAACC 2346079
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCG 45342
|| || || | || || ||||| || || || || |||||||||||||
Sbjct 2346080 TCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACGAAAATTTGCATCG 2346128
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 452003177399840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |