Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2 111 2e-19 seq1 111 2e-19 >seq2 Length=4956242 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| | || || ||||| ||||| | ||| || ||||| |||||| Sbjct 3220017 AGCAAAATCGGTGTGCATGCCTTCATCACGCGAGATCAATTCGTTTGAGAACGTCAGACC 3219958 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 |||||||| || ||||||||||||||||| || |||||| |||||||||||||| Sbjct 3219957 AGGCATGAGTCCACGCTTCTTCAACCAGAAGATACTGGCAAATGATCCAGAGAAGAAGAT 3219898 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAA 127677 ||||| || || || |||| |||||||| ||||| Sbjct 3219897 ACCCTCAACGGCAGCAAAGGCAACGAGACGCTCAGCAAA 3219859 >seq1 Length=5930846 Score = 111 bits (122), Expect = 2e-19 Identities = 297/454 (65%), Gaps = 0/454 (0%) Strand=Plus/Plus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 |||||||||| ||| | || || | ||| | |||||||| || || || | || Sbjct 4965777 TGAACTGAATAGGTGCAGAAGCTGCTTTCGTTCGTAAATAGTACATTCCTGTTTTTAACC 4965836 Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645 ||| ||||||| |||| | |||||| | | || || ||| ||| ||||| Sbjct 4965837 CCTTCTTCCAGCCATAAAAATGCATACTCGTGAGTTTTCCTGCAGTAGGATTTTTCATGA 4965896 Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705 | | |||||||| || || ||||| || | || || || || || ||||| ||||| | Sbjct 4965897 AAATATTCATACTCTGAGACTGATCAATATAACGGCCACGGTCAGCTGCCATGTCAATAA 4965956 Query 115706 CATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATAT 115765 | |||| | | |||||| |||| | || | | || | || | || || | Sbjct 4965957 TAACCTTTTGGCTCAATTCCCAGGCAGTCTTATATATATCTTTCAGCTCCTTGGGAATCT 4966016 Query 115766 CCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGATCCTTCATATCCTTTGACC 115825 | ||| ||||| ||||||||| | | | | || | || | | ||||| || || Sbjct 4966017 CGGGGATGTTTTGAATAGAGCCATCCTCGCTAATAATCATATTCCTGATATCATTATTCC 4966076 Query 115826 AGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACCCG 115885 | || | || | | || |||| ||| |||| || |||||||| || ||||| | Sbjct 4966077 ACAGCCTAAGTTGCACAAGGTCCTTCACTAGGTACTCGTTGACAACTTGGAATTCACCAG 4966136 Query 115886 CGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCA 115945 || || ||| |||||| || | ||| ||| |||||||| ||||| ||| | Sbjct 4966137 AAAGTACACGCCTCGCATAGATATTCGATGTGATTGGTTCAAAGCATTCATTAAAACCAA 4966196 Query 115946 AGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGC 115979 ||||| | ||| || ||||||||||| ||||| Sbjct 4966197 GAATTTGCGATGTTGAAGCTGTGGGCATTGGTGC 4966230 Score = 105 bits (116), Expect = 8e-18 Identities = 485/758 (64%), Gaps = 15/758 (2%) Strand=Plus/Plus Query 116437 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACAC 116496 || ||||| |||||||||| |||||| | || | ||||| ||||| ||||| || Sbjct 4966724 GATGCCAGGTTACACACAGCGGTCTCCTGTTTGGACGAGTACTGGATAATCTCCGTGCAT 4966783 Query 116497 AAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 116556 | ||| ||| ||||| || || | || ||||||||||| ||| ||||||| | ||| Sbjct 4966784 AGATTGGAAGATTTAATCGTACCAAGATTATTTTGATTTGATTTTCTGTTACAGGAATCT 4966843 Query 116557 TTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-C 116615 ||||| ||||| |||| || || ||||| ||| | || | ||| || ||| | | Sbjct 4966844 TTGTAAAGCATGAATGGAGTTCCAGTCTCGACTTGAGTCTCTAAAATGGCAAACCAGAGC 4966903 Query 116616 ATCGGCGGCTGGCACAGTGGCG---TTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAG 116672 || | |||| || | ||| || || || | || || || |||| | Sbjct 4966904 TTCTG-GGCTCTGAC-CTTGCGAACATG--TCTGTTTTCTTTTTCATATCTTTTGTACAA 4966959 Query 116673 GGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAG 116732 | || || || ||||| | || || | || || || | ||| || | || | Sbjct 4966960 AGTTTCGAATTCATCACCGTAGACGTCAGATAAACCAGGAGCTTCATCAGGTGAAAATAA 4967019 Query 116733 AGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGA 116792 |||||| | ||| |||||||| | || |||||||| || || | Sbjct 4967020 GCACCATTCTTGGTTGTTGCTTACCTTTTTCATGAACAAATCAGGGATCCAAAGAGCATA 4967079 Query 116793 GAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTC 116852 || | || ||| | |||||| | || ||||| || ||||| ||||| || Sbjct 4967080 AAACAAGTCTCGAGCTCTTAATTCTTCTTTGCCGTGATTTTTTCGTAACTCTAAAAACTC 4967139 Query 116853 CATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-ACC---CCTTGCGACGAC 116908 | ||||| |||||| ||||||| ||| | || | | ||| ||| | || Sbjct 4967140 TAATATATCACTGTGCCAAGGTTCCAAGTAAATAGCAAAAGCACCTGGTCTTTTG-TTAC 4967198 Query 116909 CAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCAT 116968 || |||| | ||||||||| || || |||||| || | ||||| || | || |||| Sbjct 4967199 CACCCTGATCTACATACCTGGCAGTATTGTTAAAAACTCTTAGCATCGGCACAATTCCAT 4967258 Query 116969 CAGATTGGCCATTTGTCCCCCGAATACGAG-ACTTGTTGGCTCTGACATCGTGGATGTGC 117027 || |||||| |||| ||| || || || | | | || || || ||||| Sbjct 4967259 TGGAGCTGCCATTACTCCCAGCAATGTAAGCACCCGTCGAC-CGGATATTATGAATGTGG 4967317 Query 117028 ATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATC 117087 | |||||| || ||||| |||||||| ||||| || | || | |||| || Sbjct 4967318 AGACCAATCCCACCTGCAGTTTTTGAGATCATAGCGCAGTCTTTTAGGGTATCGTAAATG 4967377 Query 117088 CCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGT 117147 || || || || || | || | || | | ||||||| ||| | ||| || | || Sbjct 4967378 CCTTCTATGGAATCCTCTTTCATAGCTACCAAGAAGCAGGACGATAATTGAGGATTAGGC 4967437 Query 117148 GTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAA 117185 || |||| |||||| || ||||||| ||| ||| |||| Sbjct 4967438 GTGCCAGAGTTGAATAGTGTTGGTGACGCATGGGTGAA 4967475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507169324640