Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq2 111 2e-19
seq1 111 2e-19
>seq2
Length=4956242
Score = 111 bits (122), Expect = 2e-19
Identities = 120/159 (75%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578
|||||| || ||| | || || ||||| ||||| | ||| || ||||| ||||||
Sbjct 3220017 AGCAAAATCGGTGTGCATGCCTTCATCACGCGAGATCAATTCGTTTGAGAACGTCAGACC 3219958
Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638
|||||||| || ||||||||||||||||| || |||||| ||||||||||||||
Sbjct 3219957 AGGCATGAGTCCACGCTTCTTCAACCAGAAGATACTGGCAAATGATCCAGAGAAGAAGAT 3219898
Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAA 127677
||||| || || || |||| |||||||| |||||
Sbjct 3219897 ACCCTCAACGGCAGCAAAGGCAACGAGACGCTCAGCAAA 3219859
>seq1
Length=5930846
Score = 111 bits (122), Expect = 2e-19
Identities = 297/454 (65%), Gaps = 0/454 (0%)
Strand=Plus/Plus
Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585
|||||||||| ||| | || || | ||| | |||||||| || || || | ||
Sbjct 4965777 TGAACTGAATAGGTGCAGAAGCTGCTTTCGTTCGTAAATAGTACATTCCTGTTTTTAACC 4965836
Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645
||| ||||||| |||| | |||||| | | || || ||| ||| |||||
Sbjct 4965837 CCTTCTTCCAGCCATAAAAATGCATACTCGTGAGTTTTCCTGCAGTAGGATTTTTCATGA 4965896
Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705
| | |||||||| || || ||||| || | || || || || || ||||| ||||| |
Sbjct 4965897 AAATATTCATACTCTGAGACTGATCAATATAACGGCCACGGTCAGCTGCCATGTCAATAA 4965956
Query 115706 CATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATAT 115765
| |||| | | |||||| |||| | || | | || | || | || || |
Sbjct 4965957 TAACCTTTTGGCTCAATTCCCAGGCAGTCTTATATATATCTTTCAGCTCCTTGGGAATCT 4966016
Query 115766 CCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGATCCTTCATATCCTTTGACC 115825
| ||| ||||| ||||||||| | | | | || | || | | ||||| || ||
Sbjct 4966017 CGGGGATGTTTTGAATAGAGCCATCCTCGCTAATAATCATATTCCTGATATCATTATTCC 4966076
Query 115826 AGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACCCG 115885
| || | || | | || |||| ||| |||| || |||||||| || ||||| |
Sbjct 4966077 ACAGCCTAAGTTGCACAAGGTCCTTCACTAGGTACTCGTTGACAACTTGGAATTCACCAG 4966136
Query 115886 CGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCA 115945
|| || ||| |||||| || | ||| ||| |||||||| ||||| ||| |
Sbjct 4966137 AAAGTACACGCCTCGCATAGATATTCGATGTGATTGGTTCAAAGCATTCATTAAAACCAA 4966196
Query 115946 AGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGC 115979
||||| | ||| || ||||||||||| |||||
Sbjct 4966197 GAATTTGCGATGTTGAAGCTGTGGGCATTGGTGC 4966230
Score = 105 bits (116), Expect = 8e-18
Identities = 485/758 (64%), Gaps = 15/758 (2%)
Strand=Plus/Plus
Query 116437 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACAC 116496
|| ||||| |||||||||| |||||| | || | ||||| ||||| ||||| ||
Sbjct 4966724 GATGCCAGGTTACACACAGCGGTCTCCTGTTTGGACGAGTACTGGATAATCTCCGTGCAT 4966783
Query 116497 AAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 116556
| ||| ||| ||||| || || | || ||||||||||| ||| ||||||| | |||
Sbjct 4966784 AGATTGGAAGATTTAATCGTACCAAGATTATTTTGATTTGATTTTCTGTTACAGGAATCT 4966843
Query 116557 TTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-C 116615
||||| ||||| |||| || || ||||| ||| | || | ||| || ||| | |
Sbjct 4966844 TTGTAAAGCATGAATGGAGTTCCAGTCTCGACTTGAGTCTCTAAAATGGCAAACCAGAGC 4966903
Query 116616 ATCGGCGGCTGGCACAGTGGCG---TTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAG 116672
|| | |||| || | ||| || || || | || || || |||| |
Sbjct 4966904 TTCTG-GGCTCTGAC-CTTGCGAACATG--TCTGTTTTCTTTTTCATATCTTTTGTACAA 4966959
Query 116673 GGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAG 116732
| || || || ||||| | || || | || || || | ||| || | || |
Sbjct 4966960 AGTTTCGAATTCATCACCGTAGACGTCAGATAAACCAGGAGCTTCATCAGGTGAAAATAA 4967019
Query 116733 AGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGA 116792
|||||| | ||| |||||||| | || |||||||| || || |
Sbjct 4967020 GCACCATTCTTGGTTGTTGCTTACCTTTTTCATGAACAAATCAGGGATCCAAAGAGCATA 4967079
Query 116793 GAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTC 116852
|| | || ||| | |||||| | || ||||| || ||||| ||||| ||
Sbjct 4967080 AAACAAGTCTCGAGCTCTTAATTCTTCTTTGCCGTGATTTTTTCGTAACTCTAAAAACTC 4967139
Query 116853 CATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-ACC---CCTTGCGACGAC 116908
| ||||| |||||| ||||||| ||| | || | | ||| ||| | ||
Sbjct 4967140 TAATATATCACTGTGCCAAGGTTCCAAGTAAATAGCAAAAGCACCTGGTCTTTTG-TTAC 4967198
Query 116909 CAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCAT 116968
|| |||| | ||||||||| || || |||||| || | ||||| || | || ||||
Sbjct 4967199 CACCCTGATCTACATACCTGGCAGTATTGTTAAAAACTCTTAGCATCGGCACAATTCCAT 4967258
Query 116969 CAGATTGGCCATTTGTCCCCCGAATACGAG-ACTTGTTGGCTCTGACATCGTGGATGTGC 117027
|| |||||| |||| ||| || || || | | | || || || |||||
Sbjct 4967259 TGGAGCTGCCATTACTCCCAGCAATGTAAGCACCCGTCGAC-CGGATATTATGAATGTGG 4967317
Query 117028 ATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATC 117087
| |||||| || ||||| |||||||| ||||| || | || | |||| ||
Sbjct 4967318 AGACCAATCCCACCTGCAGTTTTTGAGATCATAGCGCAGTCTTTTAGGGTATCGTAAATG 4967377
Query 117088 CCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGT 117147
|| || || || || | || | || | | ||||||| ||| | ||| || | ||
Sbjct 4967378 CCTTCTATGGAATCCTCTTTCATAGCTACCAAGAAGCAGGACGATAATTGAGGATTAGGC 4967437
Query 117148 GTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAA 117185
|| |||| |||||| || ||||||| ||| ||| ||||
Sbjct 4967438 GTGCCAGAGTTGAATAGTGTTGGTGACGCATGGGTGAA 4967475
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613507169324640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |