Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2 87.8 3e-12 >seq2 Length=4956242 Score = 87.8 bits (96), Expect = 3e-12 Identities = 348/548 (64%), Gaps = 0/548 (0%) Strand=Plus/Minus Query 159923 CACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGG 159982 || ||||| ||| ||||| || || || || ||||| || ||||| || | | || Sbjct 3220019 CAAGCAAAATCGGTGTGCATGCCTTCATCACGCGAGATCAATTCGTTTGAGAACGTCAGA 3219960 Query 159983 CCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAG 160042 || ||||||| |||||| || | ||| || || ||||| | || || ||| Sbjct 3219959 CCAGGCATGAGTCCACGCTTCTTCAACCAGAAGATACTGGCAAATGATCCAGAGAAGAAG 3219900 Query 160043 ATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGG 160102 || ||||| ||||| ||||| || ||||| | |||| |||||| || | ||| Sbjct 3219899 ATACCCTCAACGGCAGCAAAGGCAACGAGACGCTCAGCAAAAGTGGACTGATCATCAGCA 3219840 Query 160103 GTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTA 160162 |||| | ||||| ||||||||||| || || || || || | || | Sbjct 3219839 ATCCATCGGAGAGCCCAGTCAGCCTTCTTCTTAATACATGGAATATTGTCAATAGCATGG 3219780 Query 160163 AACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATT 160222 ||||| || |||||| |||||||||| ||| |||| || ||||| | Sbjct 3219779 AACAAAAAGTTAGCCTCCTTAGCATCCTTGATATAAGTGTCAATAAGTAATGAGTAGGTC 3219720 Query 160223 TCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATAC 160282 ||||| || | || || || || || || ||| ||| | | ||||| || Sbjct 3219719 TCTGCATGGATGTTCTCCATCATAATTTGGAAACCGTAAAAACACTTTGCCTCGGGAATT 3219660 Query 160283 TGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCA 160342 || || || | ||| |||| | ||| || | || || | || || | || ||| Sbjct 3219659 TGAACTTCACCAGAGAATCTTTCAACCAAGTTCTCGTTGACGATACCATCTGAAGCAGCA 3219600 Query 160343 AAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAG 160402 ||||| || | || ||||||| ||| |||||| || | || || | | |||||| Sbjct 3219599 AAGAATGCAAGGACACGAGAGATAAAAAATCTCTCATCATCATTAAGACGGTGCTCCCAG 3219540 Query 160403 TGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTT 160462 | | | ||| | | ||||||| ||||| || |||| | ||||| ||| Sbjct 3219539 TCACTGATGTCCTTTCCTAAATCAATTTCTTCAGCAGTCCAGAAAGAAGCCTCAGCCTGC 3219480 Query 160463 TTGTACAT 160470 |||||||| Sbjct 3219479 TTGTACAT 3219472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795155160242240