Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq3 129 1e-24
seq2 116 9e-21
>seq3
Length=2773601
Score = 129 bits (142), Expect = 1e-24
Identities = 151/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||||||||||||||||||||||||||| | ||||||||||| | || || |||||
Sbjct 1977683 AGGACAAGGTGGAGAGTCGACTCCTTTTGAATGTTGTAGTCAGAAAGGGTTCTGCCATCC 1977624
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| || ||||| ||||||||||| ||||| || || || || |||||| || ||
Sbjct 1977623 TCGAGTTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCT 1977564
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| ||| || | |||||| | | || || || | ||||| |||
Sbjct 1977563 TGGATCTTGGTCTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTC 1977504
Query 199598 TTACCCGTGAGAGTTTTCACAAAA 199621
||||| || || || || || |||
Sbjct 1977503 TTACCAGTAAGGGTCTTGACGAAA 1977480
Score = 118 bits (130), Expect = 2e-21
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | ||||| | |||||| ||||||||||| |||| ||||||||| | | |||
Sbjct 155253 CGAAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTA 155194
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || ||||| |||||||| ||||| |||||||| | || ||||| || ||| ||
Sbjct 155193 CGACCGTCTTCGAGCTGCTTACCGGCAAAGATGAGTCTTTGTTGGTCTGGGGGAATGCCC 155134
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| || || ||||| ||| || || | |||||| | | || || || | |
Sbjct 155133 TCCTTGTCTTGGATCTTGGTCTTGACATTATCAATGGTGTCCGAAGACTCGACCTCGAGC 155074
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| |||||||| ||||| || || || || |||||
Sbjct 155073 GTGATAGTCTTACCAGTGAGGGTCTTGACGAAGATTTG 155036
>seq2
Length=4956242
Score = 116 bits (128), Expect = 9e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||||||||||||||| ||||||||||||| ||||||||||| | || | |||||
Sbjct 2345915 AGGACAAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCC 2345974
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| || ||||| || || ||||| | ||| || || || || |||||| || ||
Sbjct 2345975 TCAAGTTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCT 2346034
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| || |||| ||||| | | || || || | ||||| |||
Sbjct 2346035 TGGATCTTGGTCTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCAAGGGTGATAGTC 2346094
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || || || || ||||||||
Sbjct 2346095 TTACCGGTAAGGGTCTTGACGAAAATTTG 2346123
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178921539580268
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |