Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq3 107 2e-18
seq2 86.0 7e-12
>seq3
Length=2773601
Score = 107 bits (118), Expect = 2e-18
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| ||||| || |||| ||||||||||| ||||| ||
Sbjct 155224 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCGTCTTCGAGCTGCTTACCGGCAAA 155165
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | | || ||||| | || | || ||||||||| |||||| |||||| |
Sbjct 155164 GATGAGTCTTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGTCTTGACATT 155105
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | ||||| || || || || | |||||| || || || || || || || ||
Sbjct 155104 ATCAATGGTGTCCGAAGACTCGACCTCGAGCGTGATAGTCTTACCAGTGAGGGTCTTGAC 155045
Query 46582 AAAGATTTGCAT 46593
|||||||||||
Sbjct 155044 GAAGATTTGCAT 155033
Score = 96.9 bits (106), Expect = 4e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
|||||||| || ||||||||||| ||||| || | || ||||| ||||| || |||||
Sbjct 154767 TCCTTTTGAATGTTGTAGTCGGAGAGAGTACGGCCATCCTCGAGTTGCTTACCAGCGAAA 154708
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
||||| ||||| ||||| | || | | ||||||||| ||||| |||||| |
Sbjct 154707 ATCAAACGCTGTTGGTCTGGAGGAATACCCTCCTTGTCTTGAATCTTGGTCTTGACGTTA 154648
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | || || ||||| || || | || || || || || |||| || || ||
Sbjct 154647 TCAATAGTATCAGAGGATTCAACTTCGAGAGTAATAGTCTTACCAGTCAAAGTCTTGACG 154588
Query 46583 AAGATTTGCAT 46593
|||||||||||
Sbjct 154587 AAGATTTGCAT 154577
Score = 87.8 bits (96), Expect = 2e-12
Identities = 136/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||||||||| || |||||||| ||||| || |||| || | ||||| || |||||
Sbjct 154995 TCCTTTTGGATGTTATAGTCGGAGAGAGTACGGCCGTCTTCCAATTGCTTACCAGCGAAA 154936
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
||||| ||||| ||||| | || | | |||||||| ||||| |||||| |||
Sbjct 154935 ATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATCTTAGTCTTGA-CGTT 154877
Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | || || || || || || | || || || || || |||| || || ||
Sbjct 154876 GTCGATAGTATCAGAGGACTCGACTTCGAGAGTAATAGTCTTACCAGTCAAAGTCTTGAC 154817
Query 46582 AAAGATTTGCAT 46593
|||||||||||
Sbjct 154816 GAAGATTTGCAT 154805
Score = 84.2 bits (92), Expect = 2e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
|||||||| || ||||||||||| ||||| || | || ||||| ||||| || || ||
Sbjct 154539 TCCTTTTGAATGTTGTAGTCGGAAAGAGTACGACCATCCTCGAGTTGCTTACCAGCAAAG 154480
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|| | | || ||||| | || | | ||||||||| |||||| |||| | |
Sbjct 154479 ATAAGTCTTTGTTGGTCTGGAGGAATACCCTCCTTGTCTTGGATCTTAGTCTTAACATTA 154420
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | || || || || || || | |||||||| || || |||| || || |||
Sbjct 154419 TCAATAGTATCAGAGGACTCGACTTCGAGGGTGATGGTCTTTCCAGTCAAGGTCTTGACA 154360
Query 46583 AAGATTTGCAT 46593
|||||||||||
Sbjct 154359 AAGATTTGCAT 154349
>seq2
Length=4956242
Score = 86.0 bits (94), Expect = 7e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||||||||| |||||||| || || || || | || || || ||||| || || ||
Sbjct 2345935 CTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCCTCAAGTTGCTTACCAGCAAA 2345994
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| || || || || | || | | ||||||||| |||||| |||||| |
Sbjct 2345995 GATCAAACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACATT 2346054
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | |||||| || || || || | ||||| || || || || || || || ||
Sbjct 2346055 GTCGATAGTGTCGGAAGACTCAACCTCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGAC 2346114
Query 46582 AAAGATTTGCAT 46593
|| ||||||||
Sbjct 2346115 GAAAATTTGCAT 2346126
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565238371738080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |