Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 seq2 86.0 7e-12 >seq3 Length=2773601 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| ||||| || |||| ||||||||||| ||||| || Sbjct 155224 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCGTCTTCGAGCTGCTTACCGGCAAA 155165 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | || ||||| | || | || ||||||||| |||||| |||||| | Sbjct 155164 GATGAGTCTTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGTCTTGACATT 155105 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || || || || | |||||| || || || || || || || || Sbjct 155104 ATCAATGGTGTCCGAAGACTCGACCTCGAGCGTGATAGTCTTACCAGTGAGGGTCTTGAC 155045 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 155044 GAAGATTTGCAT 155033 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 |||||||| || ||||||||||| ||||| || | || ||||| ||||| || ||||| Sbjct 154767 TCCTTTTGAATGTTGTAGTCGGAGAGAGTACGGCCATCCTCGAGTTGCTTACCAGCGAAA 154708 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| ||||| ||||| | || | | ||||||||| ||||| |||||| | Sbjct 154707 ATCAAACGCTGTTGGTCTGGAGGAATACCCTCCTTGTCTTGAATCTTGGTCTTGACGTTA 154648 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || || ||||| || || | || || || || || |||| || || || Sbjct 154647 TCAATAGTATCAGAGGATTCAACTTCGAGAGTAATAGTCTTACCAGTCAAAGTCTTGACG 154588 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 154587 AAGATTTGCAT 154577 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| || |||||||| ||||| || |||| || | ||||| || ||||| Sbjct 154995 TCCTTTTGGATGTTATAGTCGGAGAGAGTACGGCCGTCTTCCAATTGCTTACCAGCGAAA 154936 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| ||||| ||||| | || | | |||||||| ||||| |||||| ||| Sbjct 154935 ATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATCTTAGTCTTGA-CGTT 154877 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || || || || || | || || || || || |||| || || || Sbjct 154876 GTCGATAGTATCAGAGGACTCGACTTCGAGAGTAATAGTCTTACCAGTCAAAGTCTTGAC 154817 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 154816 GAAGATTTGCAT 154805 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 |||||||| || ||||||||||| ||||| || | || ||||| ||||| || || || Sbjct 154539 TCCTTTTGAATGTTGTAGTCGGAAAGAGTACGACCATCCTCGAGTTGCTTACCAGCAAAG 154480 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | | || ||||| | || | | ||||||||| |||||| |||| | | Sbjct 154479 ATAAGTCTTTGTTGGTCTGGAGGAATACCCTCCTTGTCTTGGATCTTAGTCTTAACATTA 154420 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || || || || || || | |||||||| || || |||| || || ||| Sbjct 154419 TCAATAGTATCAGAGGACTCGACTTCGAGGGTGATGGTCTTTCCAGTCAAGGTCTTGACA 154360 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 154359 AAGATTTGCAT 154349 >seq2 Length=4956242 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| |||||||| || || || || | || || || ||||| || || || Sbjct 2345935 CTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCCTCAAGTTGCTTACCAGCAAA 2345994 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| || || || || | || | | ||||||||| |||||| |||||| | Sbjct 2345995 GATCAAACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACATT 2346054 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| || || || || | ||||| || || || || || || || || Sbjct 2346055 GTCGATAGTGTCGGAAGACTCAACCTCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGAC 2346114 Query 46582 AAAGATTTGCAT 46593 || |||||||| Sbjct 2346115 GAAAATTTGCAT 2346126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238371738080