Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq3 123 2e-23
seq2 86.0 6e-12
>seq3
Length=2773601
Score = 123 bits (136), Expect = 2e-23
Identities = 167/229 (73%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || ||||| || || || ||||| |||| |||||| | |
Sbjct 155033 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACTATCACGCTCGAGGTCGAGTCTTCG 155092
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|||| | | | || | | |||| || |||| ||||| ||||| |||||| | ||||
Sbjct 155093 GACACCATTGATAATG--TCAAGACCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACC 155150
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
|||| | ||||| | || || || ||||| || |||| || || ||| ||||||||
Sbjct 155151 AACAAAGACTCATCTTTGCCGGTAAGCAGCTCGAAGACGGTCGTACTCTCTCCGACTACA 155210
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||||| ||||| |||| || || ||||| || ||| | | |||||
Sbjct 155211 ACATCCAGAAGGAGTCGACCCTCCACTTGGTCCTCCGTCTTCGTGGCGG 155259
Score = 116 bits (128), Expect = 4e-21
Identities = 160/220 (73%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || || || || ||||||||| |||| |||||| | |||||| | |
Sbjct 1977481 TTCGTCAAGACCCTTACTGGTAAGACCATCACCCTCGAGGTCGAGTCTTCCGACACCATT 1977540
Query 38313 CA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370
| |||| | |||| || |||| ||||| |||||||||||| | || ||||| || |
Sbjct 1977541 GACAACG--TCAAGACCAAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAACAACGTC 1977598
Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430
| || | ||| || || || || || || | | ||||| ||||||||||| ||||
Sbjct 1977599 TTATCTTCGCCGGTAAGCAACTCGAGGATGGCAGAACCCTTTCTGACTACAACATTCAAA 1977658
Query 38431 AGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||| |||| || || | || || ||||||||||| ||
Sbjct 1977659 AGGAGTCGACTCTCCACCTTGTCCTCCGTTTGAGAGGTGG 1977698
Score = 100 bits (110), Expect = 3e-16
Identities = 155/218 (71%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || | || || || || || || |||| |||||| || |
Sbjct 154805 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACTATTACTCTCGAAGTCGAGTCCTCT 154864
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|| | | | |||| | |||| || || | ||||| || || ||||| | ||||
Sbjct 154865 GATACTATCGACAACG--TCAAGACTAAGATTCAAGACAAGGAAGGTATTCCTCCAGACC 154922
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
||||||| | |||| ||| || || || |||| |||| || || ||| |||||| |
Sbjct 154923 AACAGCGTTTGATTTTCGCTGGTAAGCAATTGGAAGACGGCCGTACTCTCTCCGACTATA 154982
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||||||||||||| | || || || ||||| || |||
Sbjct 154983 ACATCCAAAAGGAATCTACTCTCCACTTGGTCCTCCGT 155020
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| || || || || | || || || ||||||||| |||| |||||| || |
Sbjct 154349 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACCATCACCCTCGAAGTCGAGTCCTCT 154408
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | | |||| || |||| ||||| ||||| ||||| | ||||||
Sbjct 154409 GATACTATTGATAATGTTAAGACTAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAA 154468
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
|| | || || | || || || || || || || | || || || ||||||||||
Sbjct 154469 CAAAGACTTATCTTTGCTGGTAAGCAACTCGAGGATGGTCGTACTCTTTCCGACTACAAC 154528
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|| ||||||||| | || || || || || || |||
Sbjct 154529 ATTCAAAAGGAATCTACTCTTCACTTAGTTCTCCGT 154564
Score = 86.0 bits (94), Expect = 6e-12
Identities = 152/218 (70%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || | || || || || || || |||| || || || |
Sbjct 154577 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACTATTACTCTCGAAGTTGAATCCTCT 154636
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|| | | | |||| | |||| || || | ||||| ||||| ||||| | ||||
Sbjct 154637 GATACTATTGATAACG--TCAAGACCAAGATTCAAGACAAGGAGGGTATTCCTCCAGACC 154694
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
||||||| | |||| ||| || || || || || || | || || ||| ||||||||
Sbjct 154695 AACAGCGTTTGATTTTCGCTGGTAAGCAACTCGAGGATGGCCGTACTCTCTCCGACTACA 154754
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||| ||||||||| | || || || || || || |||
Sbjct 154755 ACATTCAAAAGGAATCCACTCTCCACTTAGTCCTCCGT 154792
>seq2
Length=4956242
Score = 86.0 bits (94), Expect = 6e-12
Identities = 137/193 (71%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || || || || || || |||||| | || || ||| | ||
Sbjct 2346126 ATGCAAATTTTCGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTTGAGTCTTCC 2346067
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|||| | | || | | |||| || |||| ||||| |||||||||||| | || |
Sbjct 2346066 GACACTATCGACAATG--TCAAGACCAAGATCCAAGACAAGGAGGGAATTCCCCCAGATC 2346009
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
|||| || | || | || || || || || || || | || ||||| |||||||
Sbjct 2346008 AACAACGTTTGATCTTTGCTGGTAAGCAACTTGAGGATGGTCGTACCCTTTCTGACTACA 2345949
Query 38422 ACATCCAAAAGGA 38434
|||||||||||||
Sbjct 2345948 ACATCCAAAAGGA 2345936
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500172774991360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |