Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3 123 2e-23 seq2 86.0 6e-12 >seq3 Length=2773601 Score = 123 bits (136), Expect = 2e-23 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || || ||||| |||| |||||| | | Sbjct 155033 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACTATCACGCTCGAGGTCGAGTCTTCG 155092 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | || | | |||| || |||| ||||| ||||| |||||| | |||| Sbjct 155093 GACACCATTGATAATG--TCAAGACCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACC 155150 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| | ||||| | || || || ||||| || |||| || || ||| |||||||| Sbjct 155151 AACAAAGACTCATCTTTGCCGGTAAGCAGCTCGAAGACGGTCGTACTCTCTCCGACTACA 155210 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| |||| || || ||||| || ||| | | ||||| Sbjct 155211 ACATCCAGAAGGAGTCGACCCTCCACTTGGTCCTCCGTCTTCGTGGCGG 155259 Score = 116 bits (128), Expect = 4e-21 Identities = 160/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || || || || ||||||||| |||| |||||| | |||||| | | Sbjct 1977481 TTCGTCAAGACCCTTACTGGTAAGACCATCACCCTCGAGGTCGAGTCTTCCGACACCATT 1977540 Query 38313 CA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370 | |||| | |||| || |||| ||||| |||||||||||| | || ||||| || | Sbjct 1977541 GACAACG--TCAAGACCAAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAACAACGTC 1977598 Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430 | || | ||| || || || || || || | | ||||| ||||||||||| |||| Sbjct 1977599 TTATCTTCGCCGGTAAGCAACTCGAGGATGGCAGAACCCTTTCTGACTACAACATTCAAA 1977658 Query 38431 AGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| |||| || || | || || ||||||||||| || Sbjct 1977659 AGGAGTCGACTCTCCACCTTGTCCTCCGTTTGAGAGGTGG 1977698 Score = 100 bits (110), Expect = 3e-16 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || || || || || || |||| |||||| || | Sbjct 154805 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACTATTACTCTCGAAGTCGAGTCCTCT 154864 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | |||| | |||| || || | ||||| || || ||||| | |||| Sbjct 154865 GATACTATCGACAACG--TCAAGACTAAGATTCAAGACAAGGAAGGTATTCCTCCAGACC 154922 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| | |||| ||| || || || |||| |||| || || ||| |||||| | Sbjct 154923 AACAGCGTTTGATTTTCGCTGGTAAGCAATTGGAAGACGGCCGTACTCTCTCCGACTATA 154982 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||||| | || || || ||||| || ||| Sbjct 154983 ACATCCAAAAGGAATCTACTCTCCACTTGGTCCTCCGT 155020 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || || || ||||||||| |||| |||||| || | Sbjct 154349 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACCATCACCCTCGAAGTCGAGTCCTCT 154408 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | |||| || |||| ||||| ||||| ||||| | |||||| Sbjct 154409 GATACTATTGATAATGTTAAGACTAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAA 154468 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | || || | || || || || || || || | || || || |||||||||| Sbjct 154469 CAAAGACTTATCTTTGCTGGTAAGCAACTCGAGGATGGTCGTACTCTTTCCGACTACAAC 154528 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || ||||||||| | || || || || || || ||| Sbjct 154529 ATTCAAAAGGAATCTACTCTTCACTTAGTTCTCCGT 154564 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || || || || || || |||| || || || | Sbjct 154577 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACTATTACTCTCGAAGTTGAATCCTCT 154636 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | |||| | |||| || || | ||||| ||||| ||||| | |||| Sbjct 154637 GATACTATTGATAACG--TCAAGACCAAGATTCAAGACAAGGAGGGTATTCCTCCAGACC 154694 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| | |||| ||| || || || || || || | || || ||| |||||||| Sbjct 154695 AACAGCGTTTGATTTTCGCTGGTAAGCAACTCGAGGATGGCCGTACTCTCTCCGACTACA 154754 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||| ||||||||| | || || || || || || ||| Sbjct 154755 ACATTCAAAAGGAATCCACTCTCCACTTAGTCCTCCGT 154792 >seq2 Length=4956242 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || || || || |||||| | || || ||| | || Sbjct 2346126 ATGCAAATTTTCGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTTGAGTCTTCC 2346067 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | || | | |||| || |||| ||||| |||||||||||| | || | Sbjct 2346066 GACACTATCGACAATG--TCAAGACCAAGATCCAAGACAAGGAGGGAATTCCCCCAGATC 2346009 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| || | || | || || || || || || || | || ||||| ||||||| Sbjct 2346008 AACAACGTTTGATCTTTGCTGGTAAGCAACTTGAGGATGGTCGTACCCTTTCTGACTACA 2345949 Query 38422 ACATCCAAAAGGA 38434 ||||||||||||| Sbjct 2345948 ACATCCAAAAGGA 2345936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172774991360