Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq1 152 2e-31
seq3 147 9e-30
seq2 100 1e-15
>seq1
Length=5930846
Score = 152 bits (168), Expect = 2e-31
Identities = 352/527 (67%), Gaps = 10/527 (2%)
Strand=Plus/Plus
Query 450916 AATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGT 450975
||| || ||||||||||| || || | ||||||||| |||||| |||||||||| ||
Sbjct 2277975 AATCGGTATTGATCTTGGTACTACTTATTCATGTGTTGGTGTTATGAAAAATGGAAAGGT 2278034
Query 450976 AGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGA 451035
|| ||| | || ||||| ||||| || | || || |||| || ||||| ||
Sbjct 2278035 TGAGATTTTGGCCAATGATCAAGGTCTTCGTATCACCCCCTCATATGTTGCATTTACTGA 2278094
Query 451036 TTCAGAAAGACTTTTAGGGCAAGCTGCTAA-ATCAATGGTAAATTCAAATGCCAAAAACA 451094
| ||| | | |||| | |||||||| | | | | | | | || | || |
Sbjct 2278095 TGAAGAGCGTTTGGTAGGAGATGCTGCTAAGAACCAGGCTTC-TGCTAACACTGCTAATA 2278153
Query 451095 CAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAAAAG 451154
| | | ||| || ||||| ||||| | || ||| ||| | ||||| |||| ||
Sbjct 2278154 CTATTTTCGATATCAAGCGTTTGATTGGTCTTAAGTACTCAGATCAAACTGTTCAAAGAG 2278213
Query 451155 AGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGA----AAGCCCTATATTCAA 451210
| | || || ||||| | || ||||| ||||| ||||| | || ||
Sbjct 2278214 ATATTAAGCATTTCCCTTATAAGGTT----ATCAACAAGGATGGTAAGCCTGCTGTTAAA 2278269
Query 451211 GTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTT 451270
|| | |||| ||||| || || ||| |||| |||||| |||| | |||||| |
Sbjct 2278270 GTCACTTATGGTGGTGAGGAGAAGACCTTTTCTCCCGAAGAAGTTTCCGCCATGGTTTTG 2278329
Query 451271 ACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATT 451330
|| ||||| || | || || | ||| | ||| |||||| |||| || ||
Sbjct 2278330 GGCAAGATGAAGGAGATTGCCGAGGATTATTTGGGTAAGAAGGTTACTCATGCTGTTGTT 2278389
Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390
||||| || ||||||||||||||||| ||||| ||||| || || ||||| || ||||
Sbjct 2278390 ACTGTGCCTGCTTATTTCAATGATGCTCAACGTCAAGCTACCAAGGATGCCGGTACTATT 2278449
Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437
|||||||| | | || | || ||| |||| || || || || |||||
Sbjct 2278450 GCTGGTTTGACTATTTTGCGTATTGTTAACGAGCCCACTGCTGCTGC 2278496
>seq3
Length=2773601
Score = 147 bits (162), Expect = 9e-30
Identities = 158/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || ||||| || || || |||||||| || ||||||||||| ||||| || |||
Sbjct 154121 ATGCAAATCTTCGTAAAGACCCTCACTGGTAAGACCATTACTCTTGAAGTTGAGTCCTCT 154180
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| ||||| | |||| ||||||||||| |||||||| |||||||| || |||
Sbjct 154181 GATACTATTGATAATGTTAAGACCAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 154240
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
||| | | ||||| | || || ||| | |||||||| ||||| ||| | ||||| ||
Sbjct 154241 CAAAGACTTATTTTTGCTGGTAAGCAATTAGAAGATGGCAGAACCTTGTCTGATTACAAC 154300
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258
||| | ||||| | || || ||||| ||
Sbjct 154301 ATTCAAAAGGAATCCACTCTCCACTTGGT 154329
Score = 134 bits (148), Expect = 5e-26
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || ||||| || || |||||||||| ||||||||||| || |||||||| |||
Sbjct 154577 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACTATTACTCTCGAAGTTGAATCCTCT 154636
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| ||||| | || || |||||||| ||||| || |||||||| || |||
Sbjct 154637 GATACTATTGATAACGTCAAGACCAAGATTCAAGACAAGGAGGGTATTCCTCCAGACCAA 154696
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| ||||| |||||| | || || ||||| || ||||| | ||| | | || || ||
Sbjct 154697 CAGCGTTTGATTTTCGCTGGTAAGCAACTCGAGGATGGCCGTACTCTCTCCGACTACAAC 154756
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258
||| | ||||| | || || ||||||||
Sbjct 154757 ATTCAAAAGGAATCCACTCTCCACTTAGT 154785
Score = 116 bits (128), Expect = 1e-20
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || ||||| || || |||||||||| ||||||||||| || || || || |||
Sbjct 154805 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACTATTACTCTCGAAGTCGAGTCCTCT 154864
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| || || | || || |||||||| |||||||| |||||||| || |||
Sbjct 154865 GATACTATCGACAACGTCAAGACTAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 154924
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| ||||| |||||| | || || ||| | ||||| || | ||| | | || |||||
Sbjct 154925 CAGCGTTTGATTTTCGCTGGTAAGCAATTGGAAGACGGCCGTACTCTCTCCGACTATAAC 154984
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258
|| | ||||| | || || ||||| ||
Sbjct 154985 ATCCAAAAGGAATCTACTCTCCACTTGGT 155013
Score = 96.9 bits (106), Expect = 1e-14
Identities = 139/196 (71%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 391058 TTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACAT 391117
|||||| || || || |||||||| || || || || || || || || || || | |||
Sbjct 1977480 TTTCGTCAAGACCCTTACTGGTAAGACCATCACCCTCGAGGTCGAGTCTTCCGACACCAT 1977539
Query 391118 TGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTT 391177
||| | || || || ||||| ||||| |||||||| || |||||||||||| |
Sbjct 1977540 TGACAACGTCAAGACCAAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAACAACGTCT 1977599
Query 391178 AATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAA 391237
|| ||| | || || ||||| || ||||| ||||| | | || || || ||| | ||
Sbjct 1977600 TATCTTCGCCGGTAAGCAACTCGAGGATGGCAGAACCCTTTCTGACTACAACATTCAAAA 1977659
Query 391238 GGATGCAACACTTCAC 391253
||| | || || |||
Sbjct 1977660 GGAGTCGACTCTCCAC 1977675
Score = 93.3 bits (102), Expect = 2e-13
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || || || || || ||||||| || || || || || || || || || |||
Sbjct 154349 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACCATCACCCTCGAAGTCGAGTCCTCT 154408
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| ||||| | |||| || || ||||| ||||| || |||||||| || |||
Sbjct 154409 GATACTATTGATAATGTTAAGACTAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAA 154468
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
||| | | || || | || || ||||| || ||||| | ||| | | || || ||
Sbjct 154469 CAAAGACTTATCTTTGCTGGTAAGCAACTCGAGGATGGTCGTACTCTTTCCGACTACAAC 154528
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258
||| | ||||| | || |||||||||||
Sbjct 154529 ATTCAAAAGGAATCTACTCTTCACTTAGT 154557
Score = 93.3 bits (102), Expect = 2e-13
Identities = 103/135 (76%), Gaps = 2/135 (1%)
Strand=Plus/Plus
Query 420808 GTAAATACAACAGTTTTTGTAGGCATATTTACACCAACAGAAAAAGTTTCAGTTGCTAAC 420867
||||| || ||||| || | ||||||||| | ||||| || || ||||| || || |||
Sbjct 1784054 GTAAACACTACAGTCTTGGCAGGCATATTAAGACCAATGGAGAATGTTTCGGTAGCAAAC 1784113
Query 420868 AAAACTTTAATTA-AtttttttGAATAAAGAATTTCAACAATTTCTTTTAAAATAGGAAT 420926
|| |||||||| | | || ||| | |||| | |||| | |||||||| |||||| |
Sbjct 1784114 AACACTTTAATAAGACCTTCTTGGA-AAAGCAGCTCAATCACTTCTTTTAGAATAGGCAG 1784172
Query 420927 TATACCAGAATGATG 420941
|| ||||||||||||
Sbjct 1784173 TAAACCAGAATGATG 1784187
>seq2
Length=4956242
Score = 100 bits (110), Expect = 1e-15
Identities = 117/158 (74%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | |||||||| || || || || ||||| ||||| || ||||| ||||| || ||
Sbjct 2346126 ATGCAAATTTTCGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTTGAGTCTTCC 2346067
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | || || | | || || || ||||| ||||| |||||||| || ||||||
Sbjct 2346066 GACACTATCGACAATGTCAAGACCAAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAA 2346007
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGG 391207
|||||||| || || | || || |||||||| |||||
Sbjct 2346006 CAACGTTTGATCTTTGCTGGTAAGCAACTTGAGGATGG 2345969
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975718298744432
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |