Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1 152 2e-31 seq3 147 9e-30 seq2 100 1e-15 >seq1 Length=5930846 Score = 152 bits (168), Expect = 2e-31 Identities = 352/527 (67%), Gaps = 10/527 (2%) Strand=Plus/Plus Query 450916 AATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGT 450975 ||| || ||||||||||| || || | ||||||||| |||||| |||||||||| || Sbjct 2277975 AATCGGTATTGATCTTGGTACTACTTATTCATGTGTTGGTGTTATGAAAAATGGAAAGGT 2278034 Query 450976 AGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGA 451035 || ||| | || ||||| ||||| || | || || |||| || ||||| || Sbjct 2278035 TGAGATTTTGGCCAATGATCAAGGTCTTCGTATCACCCCCTCATATGTTGCATTTACTGA 2278094 Query 451036 TTCAGAAAGACTTTTAGGGCAAGCTGCTAA-ATCAATGGTAAATTCAAATGCCAAAAACA 451094 | ||| | | |||| | |||||||| | | | | | | | || | || | Sbjct 2278095 TGAAGAGCGTTTGGTAGGAGATGCTGCTAAGAACCAGGCTTC-TGCTAACACTGCTAATA 2278153 Query 451095 CAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAAAAG 451154 | | | ||| || ||||| ||||| | || ||| ||| | ||||| |||| || Sbjct 2278154 CTATTTTCGATATCAAGCGTTTGATTGGTCTTAAGTACTCAGATCAAACTGTTCAAAGAG 2278213 Query 451155 AGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGA----AAGCCCTATATTCAA 451210 | | || || ||||| | || ||||| ||||| ||||| | || || Sbjct 2278214 ATATTAAGCATTTCCCTTATAAGGTT----ATCAACAAGGATGGTAAGCCTGCTGTTAAA 2278269 Query 451211 GTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTT 451270 || | |||| ||||| || || ||| |||| |||||| |||| | |||||| | Sbjct 2278270 GTCACTTATGGTGGTGAGGAGAAGACCTTTTCTCCCGAAGAAGTTTCCGCCATGGTTTTG 2278329 Query 451271 ACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATT 451330 || ||||| || | || || | ||| | ||| |||||| |||| || || Sbjct 2278330 GGCAAGATGAAGGAGATTGCCGAGGATTATTTGGGTAAGAAGGTTACTCATGCTGTTGTT 2278389 Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 ||||| || ||||||||||||||||| ||||| ||||| || || ||||| || |||| Sbjct 2278390 ACTGTGCCTGCTTATTTCAATGATGCTCAACGTCAAGCTACCAAGGATGCCGGTACTATT 2278449 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437 |||||||| | | || | || ||| |||| || || || || ||||| Sbjct 2278450 GCTGGTTTGACTATTTTGCGTATTGTTAACGAGCCCACTGCTGCTGC 2278496 >seq3 Length=2773601 Score = 147 bits (162), Expect = 9e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || || |||||||| || ||||||||||| ||||| || ||| Sbjct 154121 ATGCAAATCTTCGTAAAGACCCTCACTGGTAAGACCATTACTCTTGAAGTTGAGTCCTCT 154180 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | |||| ||||||||||| |||||||| |||||||| || ||| Sbjct 154181 GATACTATTGATAATGTTAAGACCAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 154240 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | ||||| | || || ||| | |||||||| ||||| ||| | ||||| || Sbjct 154241 CAAAGACTTATTTTTGCTGGTAAGCAATTAGAAGATGGCAGAACCTTGTCTGATTACAAC 154300 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || || ||||| || Sbjct 154301 ATTCAAAAGGAATCCACTCTCCACTTGGT 154329 Score = 134 bits (148), Expect = 5e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||||||||| ||||||||||| || |||||||| ||| Sbjct 154577 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACTATTACTCTCGAAGTTGAATCCTCT 154636 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | || || |||||||| ||||| || |||||||| || ||| Sbjct 154637 GATACTATTGATAACGTCAAGACCAAGATTCAAGACAAGGAGGGTATTCCTCCAGACCAA 154696 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| |||||| | || || ||||| || ||||| | ||| | | || || || Sbjct 154697 CAGCGTTTGATTTTCGCTGGTAAGCAACTCGAGGATGGCCGTACTCTCTCCGACTACAAC 154756 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || || |||||||| Sbjct 154757 ATTCAAAAGGAATCCACTCTCCACTTAGT 154785 Score = 116 bits (128), Expect = 1e-20 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||||||||| ||||||||||| || || || || ||| Sbjct 154805 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACTATTACTCTCGAAGTCGAGTCCTCT 154864 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || || | || || |||||||| |||||||| |||||||| || ||| Sbjct 154865 GATACTATCGACAACGTCAAGACTAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 154924 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| |||||| | || || ||| | ||||| || | ||| | | || ||||| Sbjct 154925 CAGCGTTTGATTTTCGCTGGTAAGCAATTGGAAGACGGCCGTACTCTCTCCGACTATAAC 154984 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || || ||||| || Sbjct 154985 ATCCAAAAGGAATCTACTCTCCACTTGGT 155013 Score = 96.9 bits (106), Expect = 1e-14 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 391058 TTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACAT 391117 |||||| || || || |||||||| || || || || || || || || || || | ||| Sbjct 1977480 TTTCGTCAAGACCCTTACTGGTAAGACCATCACCCTCGAGGTCGAGTCTTCCGACACCAT 1977539 Query 391118 TGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTT 391177 ||| | || || || ||||| ||||| |||||||| || |||||||||||| | Sbjct 1977540 TGACAACGTCAAGACCAAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAACAACGTCT 1977599 Query 391178 AATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAA 391237 || ||| | || || ||||| || ||||| ||||| | | || || || ||| | || Sbjct 1977600 TATCTTCGCCGGTAAGCAACTCGAGGATGGCAGAACCCTTTCTGACTACAACATTCAAAA 1977659 Query 391238 GGATGCAACACTTCAC 391253 ||| | || || ||| Sbjct 1977660 GGAGTCGACTCTCCAC 1977675 Score = 93.3 bits (102), Expect = 2e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || ||||||| || || || || || || || || || ||| Sbjct 154349 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACCATCACCCTCGAAGTCGAGTCCTCT 154408 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | |||| || || ||||| ||||| || |||||||| || ||| Sbjct 154409 GATACTATTGATAATGTTAAGACTAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAA 154468 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || | || || ||||| || ||||| | ||| | | || || || Sbjct 154469 CAAAGACTTATCTTTGCTGGTAAGCAACTCGAGGATGGTCGTACTCTTTCCGACTACAAC 154528 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || ||||||||||| Sbjct 154529 ATTCAAAAGGAATCTACTCTTCACTTAGT 154557 Score = 93.3 bits (102), Expect = 2e-13 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 420808 GTAAATACAACAGTTTTTGTAGGCATATTTACACCAACAGAAAAAGTTTCAGTTGCTAAC 420867 ||||| || ||||| || | ||||||||| | ||||| || || ||||| || || ||| Sbjct 1784054 GTAAACACTACAGTCTTGGCAGGCATATTAAGACCAATGGAGAATGTTTCGGTAGCAAAC 1784113 Query 420868 AAAACTTTAATTA-AtttttttGAATAAAGAATTTCAACAATTTCTTTTAAAATAGGAAT 420926 || |||||||| | | || ||| | |||| | |||| | |||||||| |||||| | Sbjct 1784114 AACACTTTAATAAGACCTTCTTGGA-AAAGCAGCTCAATCACTTCTTTTAGAATAGGCAG 1784172 Query 420927 TATACCAGAATGATG 420941 || |||||||||||| Sbjct 1784173 TAAACCAGAATGATG 1784187 >seq2 Length=4956242 Score = 100 bits (110), Expect = 1e-15 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || || || ||||| ||||| || ||||| ||||| || || Sbjct 2346126 ATGCAAATTTTCGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTTGAGTCTTCC 2346067 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || || | | || || || ||||| ||||| |||||||| || |||||| Sbjct 2346066 GACACTATCGACAATGTCAAGACCAAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAA 2346007 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGG 391207 |||||||| || || | || || |||||||| ||||| Sbjct 2346006 CAACGTTTGATCTTTGCTGGTAAGCAACTTGAGGATGG 2345969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975718298744432