Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq3 331 7e-85
seq1 188 5e-42
seq4 105 5e-17
>seq3
Length=2773601
Score = 331 bits (366), Expect = 7e-85
Identities = 973/1477 (66%), Gaps = 28/1477 (2%)
Strand=Plus/Minus
Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309
|| ||| | |||| || || | ||||||||||| || | || || ||||| || |||
Sbjct 1435738 TTCTCAACAGCAGAGACGTTCAAGATACCATTGGCGTCAATGTCGAAAGTGACCTCGATT 1435679
Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 517369
||||| || || | |||| || || || || | | || | || || ||
Sbjct 1435678 TGAGGAACACCACGAGGAGCGGGAGGAATACCAGTGAGCTCGAACTTACCAAGCAAGTTG 1435619
Query 517370 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 517429
|| || || || | || ||||||||||||| ||| || || | | ||| ||
Sbjct 1435618 TTGTCCTTGGTCTTGGTACGCTCACCCTCGAAAACTTGAATGAGGACACCGGGTTGGTTG 1435559
Query 517430 TCTGAATAAGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAAT 517488
|| | ||| || | || | ||| || || || |||||| || | |||||| ||
Sbjct 1435558 TCAGCATAGGTGGAGAAGA-TCTCAGACTTCTTGGTAGGAATGGTAGAGTTTCTGGGGAT 1435500
Query 517489 AATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATC-AA 517547
| |||||||| | |||||| || || || | ||||||||||||||||| |||||| ||
Sbjct 1435499 GAGCTTGGTCATGACACCACCAGCAGTCTCGATACCAAGAGAAAGAGGAGCGACATCCAA 1435440
Query 517548 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 517607
| | |||| | |||| || | ||| | |||| ||||||||| ||||||| ||
Sbjct 1435439 CAACAACAAG-TCTTGAGTCTTGGAAGAAGTGTCACCAGAAAGAATAGCGGCTTGAACAG 1435381
Query 517608 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 517667
| |||||||| ||||| || ||||| || || | | | || | | ||||| ||||
Sbjct 1435380 CGGCACCATAGGCAACGGCCTCATCGGGGTTGATGGATCTGTTGGGCTCCTTACCGTTGA 1435321
Query 517668 AAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAA 517727
| || | |||| ||| | | ||||| || ||||| | || || ||||| | ||||
Sbjct 1435320 AGAAGTCGGAAACAAGCTTTTGAACCTTGGGGATACGGGTAGAACCACCAACAAGGACAA 1435261
Query 517728 TTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA 517787
| || | || || || || | || || || | ||| || ||||| || || |
Sbjct 1435260 TCTCGTTAACAGAAGACTTGTCAATCTTGGAGTCACGGAGAACCTTCTCAACAGGCTCGA 1435201
Query 517788 GACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT 517847
| ||| ||||| ||| ||| | || |||||| |||| | || | || |
Sbjct 1435200 TGGTAGATCTGAACAAATCTTGACACAACTCCTCGAATCTAGCACGGGTGATAGAAGTGT 1435141
Query 517848 TATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATA 517907
||||||| || ||| ||||||| || | ||| || | |||||||| |||||||| |
Sbjct 1435140 AGAAATCAATACCCTCGTACAAAGAGTCGATTTCGATAGAAGTTTGAGCAGAAGAAGACA 1435081
Query 517908 GTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAG-GCTTTTGCTGATTGA 517966
| | || ||||| ||||| || || || | | || |||| ||| || || |||
Sbjct 1435080 AAGTTCTCTTGGCACGCTCACAGGCGGTTCTCAAACGTC-TAAGAGCTCTT--TGGTTGG 1435024
Query 517967 TTCAAA--TCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGAT 518024
| ||| || | || | ||||||||||| || | || | | |||||||| |
Sbjct 1435023 TAGAAAGATCCTTCTTGTTCTTTCTCTTGAACTCGGCGACGAAGTGGTTGACAAGACGGT 1434964
Query 518025 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 518084
||| ||||| ||||| ||||| | |||| || | || || | || | ||||| |
Sbjct 1434963 GATCGAAATCCTCACCACCCAAGTGGGTATCACCAGCAGTGGCCTTGACCTCGAAAATAC 1434904
Query 518085 CATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 518144
| || |||| | ||| |||| ||||| || |||||||||| |||||| ||||| |
Sbjct 1434903 CGTCCTCAATGGTCAAGAGAGAAACATCGAAAGTACCACCACCCAAATCAAAGATAAGGA 1434844
Query 518145 CATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 518204
| ||| | || || || || || | ||| || |||| |||||| ||||| || |
Sbjct 1434843 CGTTCTTCTCGGCATCAGACTTCTTGTCCAAACCGTAGGCAATAGCAGCGGCAGTAGGCT 1434784
Query 518205 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 518264
| || || || | | ||| |||||||||||||| || ||||| || |||||||| |
Sbjct 1434783 CGTTGATGATACGGAGAACGTTAAGACCAGCAATAAGACCAGCATCCTTGGTGGCTTGAC 1434724
Query 518265 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT-TCTTTACCA 518323
||| |||||||| || || ||||| |||||||| || || ||| || | |||||
Sbjct 1434723 GTTGAGAATCGTTGAAGTAGGCAGGGACAGTAATGACAGC----GTTGCTAACAGTACCA 1434668
Query 518324 --ATATAAGCGCT-TGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 518380
| || | || || || | ||||| || | | | ||| || || |||| |||
Sbjct 1434667 CCCAAGAAACCCTCAGCAGTCTCCTTCATCTTGGTGAGGACCATAGAAGAGATTTCTTCG 1434608
Query 518381 GGGGAATATTGCTTGGATTCA-TTTTGATATGATACTTCAAAATATGGTTTATTACCAAC 518439
|| | | ||| ||| |||| | |||| || ||| || ||| |
Sbjct 1434607 GGAGTGAAGACCTTCTCCTCACCCTTGA-ACTCGACTT--GGATTTGG-GGCTTGCCAGC 1434552
Query 518440 ATT---AATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGG-TCATTAA 518495
|| || || || || || ||| || ||||| ||| || || || ||| |
Sbjct 1434551 CTTGTCAACGACCTTGAAGGGGAAGTGCTTAATATCACTTTGGAC-CTCAGGATCAGTGT 1434493
Query 518496 AATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTT 518555
| | ||||||||| || || || ||||| |||| ||| |||| || || || |||||||
Sbjct 1434492 ACTTTCTACCAATCAAACGCTTAGCATCGAAAACAGTGTTGGCAGGGTTCATGGCAGCTT 1434433
Query 518556 GATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAG 518615
||| || || ||||| ||||| | | | || | || || || | || | || ||||
Sbjct 1434432 GATTCTTAGCAGCATCACCAATTAAACGCTCGGAATCGGTGAAAGCGACGAAAGAAGGAG 1434373
Query 518616 TTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTA 518675
| || | |||||||| ||||| ||||| || |||||| || |||| | |||
Sbjct 1434372 TAGTTCTGTTACCTTGGTCATTGGCAATGATCTCAACTCTATCATTGGAAAAGTGGGCTA 1434313
Query 518676 CACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 518712
|||| | || || || ||||||||||||| |||
Sbjct 1434312 CACAGGAGTAGGTAGTACCCAAATCAATACCAACAGC 1434276
>seq1
Length=5930846
Score = 188 bits (208), Expect = 5e-42
Identities = 362/534 (68%), Gaps = 0/534 (0%)
Strand=Plus/Minus
Query 518176 ACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGC 518235
||| || |||| ||||||||||| || || |||| ||| | ||||| | | | ||||||
Sbjct 2278509 ACCGTAGGCAATGGCAGCAGCAGTGGGCTCGTTAACAATACGCAAAATAGTCAAACCAGC 2278450
Query 518236 AATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 518295
||| | || ||||| || || ||||| | ||| | ||| || ||||| ||||| |||||
Sbjct 2278449 AATAGTACCGGCATCCTTGGTAGCTTGACGTTGAGCATCATTGAAATAAGCAGGCACAGT 2278390
Query 518296 AATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACT 518355
|| ||| |||| ||| || | ||||| | |||| | || | | ||||| || |
Sbjct 2278389 AACAACAGCATGAGTAACCTTCTTACCCAAATAATCCTCGGCAATCTCCTTCATCTTGCC 2278330
Query 518356 TAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATAC 518415
|||| ||| | |||| || ||| || ||| | ||| ||| ||| | ||
Sbjct 2278329 CAAAACCATGGCGGAAACTTCTTCGGGAGAAAAGGTCTTCTCCTCACCACCATAAGTGAC 2278270
Query 518416 TTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGA 518475
|| || | || ||| | | || ||||| ||| | || | | || ||||||
Sbjct 2278269 TTTAACAGCAGGCTTACCATCCTTGTTGATAACCTTATAAGGGAAATGCTTAATATCTCT 2278210
Query 518476 TTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATT 518535
||||||| |||| || | | |||||| || || || ||| |||||||||||
Sbjct 2278209 TTGAACAGTTTGATCTGAGTACTTAAGACCAATCAAACGCTTGATATCGAAAATAGTATT 2278150
Query 518536 GGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGT 518595
| | ||| | ||| || | || || |||||||| | || | | ||| || ||
Sbjct 2278149 AGCAGTGTTAGCAGAAGCCTGGTTCTTAGCAGCATCTCCTACCAAACGCTCTTCATCAGT 2278090
Query 518596 AAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTT 518655
||||| ||||||||| || || | ||| |||||||||||| || | ||| ||||| ||
Sbjct 2278089 AAATGCAACATATGAGGGGGTGATACGAAGACCTTGATCATTGGCCAAAATCTCAACCTT 2278030
Query 518656 ACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAAT 518709
||||||| | ||||| ||||| | |||| || || | ||||||||| ||
Sbjct 2278029 TCCATTTTTCATAACACCAACACATGAATAAGTAGTACCAAGATCAATACCGAT 2277976
Score = 134 bits (148), Expect = 1e-25
Identities = 410/633 (65%), Gaps = 7/633 (1%)
Strand=Plus/Minus
Query 518025 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 518084
|||| ||||||| ||| ||||| | |||| || | ||||| | || ||| | |
Sbjct 2849332 TATCGAAATCTTGACCACCCAAGTGGGTATCACCGGCAGTAGCCTTGACAGTGAAGACAC 2849273
Query 518085 CATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 518144
|| ||| | | ||| | ||||| || |||||||| | ||| ||||| || |
Sbjct 2849272 CACCTTGGATTTGAAGAAGGGAGACATCGAAAGTACCACCACCAAGATCGAAAATGAGAA 2849213
Query 518145 CATTCATTTCTTTGTCTTGGTTTTT-----ATCAAGACCATACGCAAAAGCAGCAGCAGT 518199
| | | | || | || ||| || | ||||||| || |||| |||||||||||
Sbjct 2849212 CGTGCTTCTCCTCCTC--GGTCTTACCAGCACCAAGACCGTAGGCAATGGCAGCAGCAGT 2849155
Query 518200 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259
|| || ||||| || | | ||| |||||||||||||| || || || || || ||
Sbjct 2849154 AGGCTCGTTAATGATACGGAGAACGTTAAGACCAGCAATGGCACCAGCGTCCTTGGTAGC 2849095
Query 518260 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTT 518319
||||||||| || ||||| || || ||||| ||||| | |||||| | || | ||
Sbjct 2849094 TTGTCTTTGAGAGTCGTTGAAGTAGGCAGGGACAGTGACAACGGCCTTCTCGACCTTCTT 2849035
Query 518320 ACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTC 518379
||||| | || || | | ||||| || | | || ||| | || || | ||
Sbjct 2849034 GCCAATCTTGGCCTCAGCAATCTCCTTCATCTTGGTAAGAACCATGGCGGAGATCTCTTG 2848975
Query 518380 TGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAAC 518439
|| || | ||||| || | | ||| || |||| | | || ||| |
Sbjct 2848974 GGGAGAGAAAGTCTTGGTCTCCTCGAGGTATTGGACCTCAATAAAGGGGTTACCGTTAGA 2848915
Query 518440 ATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATC 518499
| ||||| || || ||||| || ||||| ||||||| | |||| ||||
Sbjct 2848914 GTCGATAACCTTGAAAGGCCAAGTCTTGATATCCTTTTGAACAGAGTCCTCATCAAAACG 2848855
Query 518500 TCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATA 518559
||||||||| || || || ||||| || | ||| || | || |||| |||||||| |
Sbjct 2848854 TCTACCAATCAAACGCTTGGCATCGAAGACAGTGTTCTTGGGGTTAAGAGCAGCTTGGTT 2848795
Query 518560 TTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGT 518619
|| || ||||| ||||| || || | || | || | ||| | || |||||
Sbjct 2848794 CTTAGCGGCATCACCAATAAGTCTCTCCTTGTCAGAGAAAGCAACGAACGAAGGAGTAAC 2848735
Query 518620 GCGATTACCTTGATCATTCGCAATAATTTCAAC 518652
|| |||||||| || || ||||| || || ||
Sbjct 2848734 ACGGTTACCTTGCTCGTTGGCAATGATCTCGAC 2848702
>seq4
Length=2277569
Score = 105 bits (116), Expect = 5e-17
Identities = 114/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 518156 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 518215
||||| | | | || || | |||||| || |||||||| ||||| || || || | ||
Sbjct 1737081 TTGTCCTCGGTCTTGTCCAAACCATAAGCCAAAGCAGCGGCAGTAGGCTCGTTGACAACA 1737140
Query 518216 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 518275
| |||||| || | |||| ||||| || ||||| ||||| ||||| | ||| || |||
Sbjct 1737141 CGCAAAACGTTCAAACCAACAATTTGACCAGCATCCTTAGTAGCTTGACGTTGAGAGTCG 1737200
Query 518276 TTAAAATATGCAGGAACAGTAATAACGGCAT 518306
|| || || ||||||||||| | ||||||||
Sbjct 1737201 TTGAAGTAAGCAGGAACAGTGACAACGGCAT 1737231
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780822201506824
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |