Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq3 331 7e-85 seq1 188 5e-42 seq4 105 5e-17 >seq3 Length=2773601 Score = 331 bits (366), Expect = 7e-85 Identities = 973/1477 (66%), Gaps = 28/1477 (2%) Strand=Plus/Minus Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309 || ||| | |||| || || | ||||||||||| || | || || ||||| || ||| Sbjct 1435738 TTCTCAACAGCAGAGACGTTCAAGATACCATTGGCGTCAATGTCGAAAGTGACCTCGATT 1435679 Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 517369 ||||| || || | |||| || || || || | | || | || || || Sbjct 1435678 TGAGGAACACCACGAGGAGCGGGAGGAATACCAGTGAGCTCGAACTTACCAAGCAAGTTG 1435619 Query 517370 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 517429 || || || || | || ||||||||||||| ||| || || | | ||| || Sbjct 1435618 TTGTCCTTGGTCTTGGTACGCTCACCCTCGAAAACTTGAATGAGGACACCGGGTTGGTTG 1435559 Query 517430 TCTGAATAAGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAAT 517488 || | ||| || | || | ||| || || || |||||| || | |||||| || Sbjct 1435558 TCAGCATAGGTGGAGAAGA-TCTCAGACTTCTTGGTAGGAATGGTAGAGTTTCTGGGGAT 1435500 Query 517489 AATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATC-AA 517547 | |||||||| | |||||| || || || | ||||||||||||||||| |||||| || Sbjct 1435499 GAGCTTGGTCATGACACCACCAGCAGTCTCGATACCAAGAGAAAGAGGAGCGACATCCAA 1435440 Query 517548 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 517607 | | |||| | |||| || | ||| | |||| ||||||||| ||||||| || Sbjct 1435439 CAACAACAAG-TCTTGAGTCTTGGAAGAAGTGTCACCAGAAAGAATAGCGGCTTGAACAG 1435381 Query 517608 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 517667 | |||||||| ||||| || ||||| || || | | | || | | ||||| |||| Sbjct 1435380 CGGCACCATAGGCAACGGCCTCATCGGGGTTGATGGATCTGTTGGGCTCCTTACCGTTGA 1435321 Query 517668 AAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAA 517727 | || | |||| ||| | | ||||| || ||||| | || || ||||| | |||| Sbjct 1435320 AGAAGTCGGAAACAAGCTTTTGAACCTTGGGGATACGGGTAGAACCACCAACAAGGACAA 1435261 Query 517728 TTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA 517787 | || | || || || || | || || || | ||| || ||||| || || | Sbjct 1435260 TCTCGTTAACAGAAGACTTGTCAATCTTGGAGTCACGGAGAACCTTCTCAACAGGCTCGA 1435201 Query 517788 GACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT 517847 | ||| ||||| ||| ||| | || |||||| |||| | || | || | Sbjct 1435200 TGGTAGATCTGAACAAATCTTGACACAACTCCTCGAATCTAGCACGGGTGATAGAAGTGT 1435141 Query 517848 TATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATA 517907 ||||||| || ||| ||||||| || | ||| || | |||||||| |||||||| | Sbjct 1435140 AGAAATCAATACCCTCGTACAAAGAGTCGATTTCGATAGAAGTTTGAGCAGAAGAAGACA 1435081 Query 517908 GTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAG-GCTTTTGCTGATTGA 517966 | | || ||||| ||||| || || || | | || |||| ||| || || ||| Sbjct 1435080 AAGTTCTCTTGGCACGCTCACAGGCGGTTCTCAAACGTC-TAAGAGCTCTT--TGGTTGG 1435024 Query 517967 TTCAAA--TCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGAT 518024 | ||| || | || | ||||||||||| || | || | | |||||||| | Sbjct 1435023 TAGAAAGATCCTTCTTGTTCTTTCTCTTGAACTCGGCGACGAAGTGGTTGACAAGACGGT 1434964 Query 518025 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 518084 ||| ||||| ||||| ||||| | |||| || | || || | || | ||||| | Sbjct 1434963 GATCGAAATCCTCACCACCCAAGTGGGTATCACCAGCAGTGGCCTTGACCTCGAAAATAC 1434904 Query 518085 CATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 518144 | || |||| | ||| |||| ||||| || |||||||||| |||||| ||||| | Sbjct 1434903 CGTCCTCAATGGTCAAGAGAGAAACATCGAAAGTACCACCACCCAAATCAAAGATAAGGA 1434844 Query 518145 CATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 518204 | ||| | || || || || || | ||| || |||| |||||| ||||| || | Sbjct 1434843 CGTTCTTCTCGGCATCAGACTTCTTGTCCAAACCGTAGGCAATAGCAGCGGCAGTAGGCT 1434784 Query 518205 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 518264 | || || || | | ||| |||||||||||||| || ||||| || |||||||| | Sbjct 1434783 CGTTGATGATACGGAGAACGTTAAGACCAGCAATAAGACCAGCATCCTTGGTGGCTTGAC 1434724 Query 518265 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT-TCTTTACCA 518323 ||| |||||||| || || ||||| |||||||| || || ||| || | ||||| Sbjct 1434723 GTTGAGAATCGTTGAAGTAGGCAGGGACAGTAATGACAGC----GTTGCTAACAGTACCA 1434668 Query 518324 --ATATAAGCGCT-TGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 518380 | || | || || || | ||||| || | | | ||| || || |||| ||| Sbjct 1434667 CCCAAGAAACCCTCAGCAGTCTCCTTCATCTTGGTGAGGACCATAGAAGAGATTTCTTCG 1434608 Query 518381 GGGGAATATTGCTTGGATTCA-TTTTGATATGATACTTCAAAATATGGTTTATTACCAAC 518439 || | | ||| ||| |||| | |||| || ||| || ||| | Sbjct 1434607 GGAGTGAAGACCTTCTCCTCACCCTTGA-ACTCGACTT--GGATTTGG-GGCTTGCCAGC 1434552 Query 518440 ATT---AATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGG-TCATTAA 518495 || || || || || || ||| || ||||| ||| || || || ||| | Sbjct 1434551 CTTGTCAACGACCTTGAAGGGGAAGTGCTTAATATCACTTTGGAC-CTCAGGATCAGTGT 1434493 Query 518496 AATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTT 518555 | | ||||||||| || || || ||||| |||| ||| |||| || || || ||||||| Sbjct 1434492 ACTTTCTACCAATCAAACGCTTAGCATCGAAAACAGTGTTGGCAGGGTTCATGGCAGCTT 1434433 Query 518556 GATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAG 518615 ||| || || ||||| ||||| | | | || | || || || | || | || |||| Sbjct 1434432 GATTCTTAGCAGCATCACCAATTAAACGCTCGGAATCGGTGAAAGCGACGAAAGAAGGAG 1434373 Query 518616 TTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTA 518675 | || | |||||||| ||||| ||||| || |||||| || |||| | ||| Sbjct 1434372 TAGTTCTGTTACCTTGGTCATTGGCAATGATCTCAACTCTATCATTGGAAAAGTGGGCTA 1434313 Query 518676 CACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 518712 |||| | || || || ||||||||||||| ||| Sbjct 1434312 CACAGGAGTAGGTAGTACCCAAATCAATACCAACAGC 1434276 >seq1 Length=5930846 Score = 188 bits (208), Expect = 5e-42 Identities = 362/534 (68%), Gaps = 0/534 (0%) Strand=Plus/Minus Query 518176 ACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGC 518235 ||| || |||| ||||||||||| || || |||| ||| | ||||| | | | |||||| Sbjct 2278509 ACCGTAGGCAATGGCAGCAGCAGTGGGCTCGTTAACAATACGCAAAATAGTCAAACCAGC 2278450 Query 518236 AATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 518295 ||| | || ||||| || || ||||| | ||| | ||| || ||||| ||||| ||||| Sbjct 2278449 AATAGTACCGGCATCCTTGGTAGCTTGACGTTGAGCATCATTGAAATAAGCAGGCACAGT 2278390 Query 518296 AATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACT 518355 || ||| |||| ||| || | ||||| | |||| | || | | ||||| || | Sbjct 2278389 AACAACAGCATGAGTAACCTTCTTACCCAAATAATCCTCGGCAATCTCCTTCATCTTGCC 2278330 Query 518356 TAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATAC 518415 |||| ||| | |||| || ||| || ||| | ||| ||| ||| | || Sbjct 2278329 CAAAACCATGGCGGAAACTTCTTCGGGAGAAAAGGTCTTCTCCTCACCACCATAAGTGAC 2278270 Query 518416 TTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGA 518475 || || | || ||| | | || ||||| ||| | || | | || |||||| Sbjct 2278269 TTTAACAGCAGGCTTACCATCCTTGTTGATAACCTTATAAGGGAAATGCTTAATATCTCT 2278210 Query 518476 TTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATT 518535 ||||||| |||| || | | |||||| || || || ||| ||||||||||| Sbjct 2278209 TTGAACAGTTTGATCTGAGTACTTAAGACCAATCAAACGCTTGATATCGAAAATAGTATT 2278150 Query 518536 GGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGT 518595 | | ||| | ||| || | || || |||||||| | || | | ||| || || Sbjct 2278149 AGCAGTGTTAGCAGAAGCCTGGTTCTTAGCAGCATCTCCTACCAAACGCTCTTCATCAGT 2278090 Query 518596 AAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTT 518655 ||||| ||||||||| || || | ||| |||||||||||| || | ||| ||||| || Sbjct 2278089 AAATGCAACATATGAGGGGGTGATACGAAGACCTTGATCATTGGCCAAAATCTCAACCTT 2278030 Query 518656 ACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAAT 518709 ||||||| | ||||| ||||| | |||| || || | ||||||||| || Sbjct 2278029 TCCATTTTTCATAACACCAACACATGAATAAGTAGTACCAAGATCAATACCGAT 2277976 Score = 134 bits (148), Expect = 1e-25 Identities = 410/633 (65%), Gaps = 7/633 (1%) Strand=Plus/Minus Query 518025 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 518084 |||| ||||||| ||| ||||| | |||| || | ||||| | || ||| | | Sbjct 2849332 TATCGAAATCTTGACCACCCAAGTGGGTATCACCGGCAGTAGCCTTGACAGTGAAGACAC 2849273 Query 518085 CATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 518144 || ||| | | ||| | ||||| || |||||||| | ||| ||||| || | Sbjct 2849272 CACCTTGGATTTGAAGAAGGGAGACATCGAAAGTACCACCACCAAGATCGAAAATGAGAA 2849213 Query 518145 CATTCATTTCTTTGTCTTGGTTTTT-----ATCAAGACCATACGCAAAAGCAGCAGCAGT 518199 | | | | || | || ||| || | ||||||| || |||| ||||||||||| Sbjct 2849212 CGTGCTTCTCCTCCTC--GGTCTTACCAGCACCAAGACCGTAGGCAATGGCAGCAGCAGT 2849155 Query 518200 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259 || || ||||| || | | ||| |||||||||||||| || || || || || || Sbjct 2849154 AGGCTCGTTAATGATACGGAGAACGTTAAGACCAGCAATGGCACCAGCGTCCTTGGTAGC 2849095 Query 518260 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTT 518319 ||||||||| || ||||| || || ||||| ||||| | |||||| | || | || Sbjct 2849094 TTGTCTTTGAGAGTCGTTGAAGTAGGCAGGGACAGTGACAACGGCCTTCTCGACCTTCTT 2849035 Query 518320 ACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTC 518379 ||||| | || || | | ||||| || | | || ||| | || || | || Sbjct 2849034 GCCAATCTTGGCCTCAGCAATCTCCTTCATCTTGGTAAGAACCATGGCGGAGATCTCTTG 2848975 Query 518380 TGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAAC 518439 || || | ||||| || | | ||| || |||| | | || ||| | Sbjct 2848974 GGGAGAGAAAGTCTTGGTCTCCTCGAGGTATTGGACCTCAATAAAGGGGTTACCGTTAGA 2848915 Query 518440 ATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATC 518499 | ||||| || || ||||| || ||||| ||||||| | |||| |||| Sbjct 2848914 GTCGATAACCTTGAAAGGCCAAGTCTTGATATCCTTTTGAACAGAGTCCTCATCAAAACG 2848855 Query 518500 TCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATA 518559 ||||||||| || || || ||||| || | ||| || | || |||| |||||||| | Sbjct 2848854 TCTACCAATCAAACGCTTGGCATCGAAGACAGTGTTCTTGGGGTTAAGAGCAGCTTGGTT 2848795 Query 518560 TTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGT 518619 || || ||||| ||||| || || | || | || | ||| | || ||||| Sbjct 2848794 CTTAGCGGCATCACCAATAAGTCTCTCCTTGTCAGAGAAAGCAACGAACGAAGGAGTAAC 2848735 Query 518620 GCGATTACCTTGATCATTCGCAATAATTTCAAC 518652 || |||||||| || || ||||| || || || Sbjct 2848734 ACGGTTACCTTGCTCGTTGGCAATGATCTCGAC 2848702 >seq4 Length=2277569 Score = 105 bits (116), Expect = 5e-17 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 518156 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 518215 ||||| | | | || || | |||||| || |||||||| ||||| || || || | || Sbjct 1737081 TTGTCCTCGGTCTTGTCCAAACCATAAGCCAAAGCAGCGGCAGTAGGCTCGTTGACAACA 1737140 Query 518216 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 518275 | |||||| || | |||| ||||| || ||||| ||||| ||||| | ||| || ||| Sbjct 1737141 CGCAAAACGTTCAAACCAACAATTTGACCAGCATCCTTAGTAGCTTGACGTTGAGAGTCG 1737200 Query 518276 TTAAAATATGCAGGAACAGTAATAACGGCAT 518306 || || || ||||||||||| | |||||||| Sbjct 1737201 TTGAAGTAAGCAGGAACAGTGACAACGGCAT 1737231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780822201506824