Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2 105 8e-18 seq1 96.9 4e-15 >seq2 Length=4956242 Score = 105 bits (116), Expect = 8e-18 Identities = 159/223 (71%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 102112 TTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AGTCGC 102168 ||||||||||| | ||||| || || |||||| | ||| ||| | | | |||| Sbjct 3219797 TTCCATGTATTAAGAAGAAGGCTGACTGGGCTCTCCGATGGATTGCTGATGATCAGTCCA 3219856 Query 102169 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 102228 || |||||||||| ||| | || ||||| ||||||||||||||||||||||| | Sbjct 3219857 CTT---TTGCTGAGCGTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCTCTGGAT 3219913 Query 102229 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 102288 | || | ||| | ||| | |||||||| || |||||||| ||||| ||||| | Sbjct 3219914 CATTTGCCAGTATCTTCTGGTTGAAGAAGCGTGGACTCATGCCTGGTCTGACGTTCTCAA 3219973 Query 102289 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||| | ||||| ||||| || || | ||| || ||||| Sbjct 3219974 ACGAATTGATCTCGCGTGATGAAGGCATGCACACCGATTTTGC 3220016 >seq1 Length=5930846 Score = 96.9 bits (106), Expect = 4e-15 Identities = 584/923 (63%), Gaps = 25/923 (3%) Strand=Plus/Minus Query 111545 TTATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTCTTGAT 111604 |||||| || | ||||| ||||| | | ||||| | | | || |||| | || Sbjct 4967635 TTATTTCGGATTAAAGACGCTCGAAAGATCGTACCTGCTTAAAATGTATGGCAGAGTTAT 4967576 Query 111605 GGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGA 111664 |||| || || | ||||| ||| | || ||| | ||||| ||||| |||||| || Sbjct 4967575 TGAAAGGCCGCAACAGATGTTAATGAGAGTGGCGGTGGGTATTCATGGCAGAGATATAGA 4967516 Query 111665 TTCTGTTTTGGAGACATACGACAAGATGTCCCGTGG-----TATGTTCATCCACGCAACA 111719 | || | |||||||| | ||||| || ||| |||| ||| || || Sbjct 4967515 TAGGGTCATCGAGACATATCAATTAATGTC----GGAAAAATAT-TTCACCCATGCGTCA 4967461 Query 111720 CCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCA 111779 ||||| || |||||| |||| || || | || ||| | || || ||| | | || Sbjct 4967460 CCAACACTATTCAACTCTGGCACGCCTAATCCTCAATTATCGTCCTGCTTCTTGGTAGCT 4967401 Query 111780 AACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCA 111839 | || |||||||| || | |||||||||| || || | || || || |||||| Sbjct 4967400 ATGAAAGAGGATTCCATAGAAGGCATTTACGATACCCTAAAAGACTGCGCTATGATCTCA 4967341 Query 111840 AAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGT-CTCGTAT 111898 || || ||||| || || | ||||| ||| || || | | | || || || || Sbjct 4967340 AAAACTGCAGGTGGGATTGGTCTCCACATTCATAATATCCG-GTCGACGGGTGCTTACAT 4967282 Query 111899 TAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCAC 111958 | || | ||||| || |||| ||| | || ||||| | || |||||| || Sbjct 4967281 TGCTGGGAGTAATGGCAGCTCCAATGGAATTGTGCCGATGCTAAGAGTTTTTAACAATAC 4967222 Query 111959 AGCGCGCTATGTAAACCAAGCTGGGCGTCGCAAG----GGATCTATCGCAGTCTATCTTG 112014 || | |||||| | || | ||| | ||| || || | || | || | | Sbjct 4967221 TGCCAGGTATGTAGATCAGGGTGGTAA-CAAAAGACCAGGTGCTTTTGCTATTTACTTGG 4967163 Query 112015 AGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGG 112074 | || |||||| ||||| | ||||| | ||||| || || || || | || | Sbjct 4967162 AACCTTGGCACAGTGATATATTAGAGTTTTTAGAGTTACGAAAAAATCACGGCAAAGAAG 4967103 Query 112075 AGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAG 112134 | | || || | || | ||||| ||||| || ||| | |||||||| | || Sbjct 4967102 AATTAAGAGCTCGAGACTTGTTTTATGCTCTTTGGATCCCTGATTTGTTCATGAAAA-AG 4967044 Query 112135 TTGAGGAGAGTGGCAAT--TGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA 112192 | || | | ||| |||| | |||| || || | || || ||| | || || Sbjct 4967043 GTAAGCA-ACAACCAAGAATGGTGCTTATTTTCACCTGATGAAGCTCCTGGTTTATCTGA 4966985 Query 112193 TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGAC 112252 | | ||||| || || ||| | | |||| || || || |||||| | | | Sbjct 4966984 CGTCTACGGTGATGAATTCGAAACTTTGTACAAAAGATATGAAAAAGAAAA-CAGACATG 4966926 Query 112253 TGCG-ACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACT 112310 | || | ||| ||| | || | | ||| || ||| | || ||||| ||||||| Sbjct 4966925 TTCGCAAGGTCAGAGCC-CAGAAGCTCTGGTTTGCCATTTTAGAGACTCAAGTCGAGACT 4966867 Query 112311 GGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTG 112370 || || |||| |||||||||||||| |||||||| ||| |||||||| ||| | Sbjct 4966866 GGAACTCCATTCATGCTTTACAAAGATTCCTGTAACAGAAAATCAAATCAAAATAATCTT 4966807 Query 112371 GGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAG 112430 ||| ||| || |||||| || || || || || | | | | |||| | ||| Sbjct 4966806 GGTACGATTAAATCTTCCAATCTATGCACGGAGATTATCCAGTACTCGTCCAAACAGGAG 4966747 Query 112431 ACGGCTGTGTGTAACCTCGCATC 112453 || |||||||||||||| ||||| Sbjct 4966746 ACCGCTGTGTGTAACCTGGCATC 4966724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742368962880