Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2 140 4e-28 seq1 131 2e-25 >seq2 Length=4956242 Score = 140 bits (154), Expect = 4e-28 Identities = 1041/1663 (63%), Gaps = 53/1663 (3%) Strand=Plus/Minus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559 ||||| || ||| |||||||| || | |||||||||| ||||| || ||||| Sbjct 3634305 GTTCAAAGATTGACTTTGATCGATAAAGGCAGCACGATCAGCAGCCATATCAATGATTGT 3634246 Query 109560 CTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCAC 109619 ||| || || ||||| |||||||| ||||| ||||||||| || || |||| Sbjct 3634245 CTTCTGAGAAAGCTCCCAAACAGTCTTATACAATGCCTTGATATCCTCAGGGATGTTAGG 3634186 Query 109620 GATGTTTTGAATAGAGCCACCAGCCTTCACCATGAG---ATCCTTCATCT-CTTTCGACC 109675 || || |||||||| |||| || | || | || |||||| | || || || Sbjct 3634185 AATATTCTGAATAGA---ACCATTGTTGGCAATAATTCTATTCTTCATGTTCTCTCC-CC 3634130 Query 109676 AGAGACCGACCTTTTTGAGATCGT-CAACAAGATGCTTG-TTGACCACGACAAATTCACC 109733 | || || | | || || | |||||| ||| || || | |||||||| Sbjct 3634129 ACAGTCCCAAATCGACAAGGTCCTTCAACAACCA--TTGATTAACAATTTGGAATTCACC 3634072 Query 109734 AGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCC 109793 ||||| | || ||||||||| | ||||| ||||||||||| || ||||| || Sbjct 3634071 GGCAAGAACTCTACGAGAGTAGATGTTGGATGTGTAAGGTTCGAAACATTCGTTGTTACC 3634012 Query 109794 TAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACC 109853 || ||||||| || || || || ||||| ||||| | |||||| ||||| ||||| Sbjct 3634011 AAGAATTTGTGATGTTGAGGCAGTAGGCATAGGAGCAACGAGAAGGGAGTTTCTCAGACC 3633952 Query 109854 CTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTC 109913 | | | | | || | || |||| || | || || | | | Sbjct 3633951 ATGCTTAGCCATCTTCTTCTTGAGAGCAGCCCAGTCCCAGAGATCAGTGGGAGTGAT--- 3633895 Query 109914 ACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTC 109973 |||||||| ||| ||| | | ||||| | ||||||||||| | | || |||| Sbjct 3633894 ---ATCCCACAAATCAAATTGCAAAAGACCCTTTGAGGCAGGAGAACCTTGGTAAGTCTC 3633838 Query 109974 GTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGT 110033 || | || | | ||||| | || |||| || | || |||||||| || || Sbjct 3633837 ATAGGGTCCGTACAATTCGGCGAGTTCAACCGAAGATTCAACAGCAGCATGATAGATGGT 3633778 Query 110034 CTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAG 110093 |||| ||| ||| | |||| | | ||| ||||||| || | || | Sbjct 3633777 CTCAGCAATTTGAACGTTCAATTGCTTGGCCTCAGGGGAGTCGAATGGCAAACGGAGAGC 3633718 Query 110094 AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGA 110153 ||||| |||| || | ||| |||| ||| ||| ||||||| | || | || Sbjct 3633717 CATAAAGGCATCGGCCAAACCTTGAATACCAAGAGCAATGGGTCTGTGACGGAAATT--- 3633661 Query 110154 GCGTCGAGCAGTTTCT---ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTT 110210 || || ||| ||| || ||||||||||| | ||| || | ||| | || | Sbjct 3633660 GCTTCTTTCAGCTTCCTTGACAGGGTAAAAGTTTCTGTCAATAATAACATTCAAGTTTCT 3633601 Query 110211 CGTCACAGTCTTCGTGATTTCATGGAGTTTGTC---GTAAT----CGAACGTTT-TCGTC 110262 || ||| ||| | | || || ||||||| || || | ||| || || || Sbjct 3633600 AGTGACAACCTTGGCAACCTCGTGAAGTTTGTTAAAGTTATACCACAAACCTTCCTCATC 3633541 Query 110263 TCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCT 110322 | || || | || |||| | || || | ||| || || | | || || Sbjct 3633540 ACTTTCA--ACGAAAGCAGGTAGAGACAACGATGCCAAATTACAGACGGCAACTTCTTCA 3633483 Query 110323 TTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTC 110382 | ||| || | |||||| ||||||||||| ||| || ||||||||| Sbjct 3633482 GGAGAAGAGTACTCAACAATTTCACAGCACAAGTTGGAGGACTTGATAGTACCCAAGTTT 3633423 Query 110383 TTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCC 110442 | || || ||| || || ||||||||||| |||||| ||||| ||||||| || Sbjct 3633422 TGTTGGTTACTCTTGCTATTACAAGCATCCTTATAAAGCATGAATGGGTTACCAGTCTCA 3633363 Query 110443 GTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGA 110502 || || | | |||||| || | ||| | | ||| || ||| | | | Sbjct 3633362 GTTTGAGCTTCGAGAATAGCATACCACAGCTTTTGGGCCTTGATGGTTCTTCTGCCTCTA 3633303 Query 110503 CCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGA 110562 ||||||| ||||||||| || | | | || || | || || |||||| | Sbjct 3633302 CCTTCCTTCTCGTACTTCTCATAAAGAGCAACGAACTCGTCACCATAGACATCATCCAAG 3633243 Query 110563 CCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCT--CCTCAACCCTCTTCA 110620 || || | |||||| | | | ||||| || | | ||| || ||||||| Sbjct 3633242 CCAGGACACTCATTGGGACACATCAAAGTCCAAT--CCTCGTTAGCCTTGACTCTCTTCA 3633185 Query 110621 TGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCAC 110680 |||||| |||||||||||| | ||| |||| | || | | ||| | ||||| | || Sbjct 3633184 TGAACAAGTCAGGAATCCATAGAGCCAAGAACAAATCTCTGGCACGGACTTCTTCCTTAC 3633125 Query 110681 CTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGA 110740 | || || || ||||| | || || | | ||| ||||| || || | || | Sbjct 3633124 CGTGATTCTTTCGCAGCTCAATGAATTCAAAAACATCATCATGCCAAGGCTCCAAGTACA 3633065 Query 110741 CAGCGA-------TGGATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCA 110793 || | ||| || |||| || || |||| | |||||| | || || | Sbjct 3633064 TGGCAAAAGCACCTGG-TCGCTTATTACCAC---CCTGATCAACATATCTAGCAGTATTA 3633009 Query 110794 TTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTG 110853 ||||| || || | ||| |||| ||| || | || ||| || || || ||| | Sbjct 3633008 TTGAAAACTCTCAACATGGGAACAATACCGTTTGAGGTACCGTTAGTTCCAGCAATGTAG 3632949 Query 110854 GACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATT 110913 || | | ||||| || | || | | || |||||||||||| || |||| ||| Sbjct 3632948 GAGCCAGTAGCACGGATATTATGAACACTCAAACCAATACCACCAGCAGACTTTGAAATC 3632889 Query 110914 TGTGCAC-ACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAAT 110972 |||| | ||| | | ||| | ||||| ||||| || ||||| |||| || || Sbjct 3632888 AAGGCACAAGTCT-TCAAAGTATCGTAAATGCCATCTATAGAATCGTCCTTCATGTTAAC 3632830 Query 110973 TAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGC 111032 | |||||||| ||||| ||||| || || || |||||| | || || || | || Sbjct 3632829 CAAGAAGCAAGAGGACATTTGAGGCTTGGGAGTACCAGCATTGTACAGAGTGGGGGAGGC 3632770 Query 111033 ATGAATGAACAGAC-CTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTT 111091 ||| | || | || ||| ||||| | ||||||||| || | || || | ||| Sbjct 3632769 ATGTGT-AAAATACTTTTGAGACATGTAGTTGTATGTTTCAATGGCCTTGGTGATATCAG 3632711 Query 111092 TACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGG 111134 ||| |||||||||| || |||| ||||| ||| | ||| || Sbjct 3632710 AACCATGAATACCAACAGCTACTCTCATGATCATGTGTTGGGG 3632668 >seq1 Length=5930846 Score = 131 bits (144), Expect = 2e-25 Identities = 290/433 (67%), Gaps = 4/433 (1%) Strand=Plus/Plus Query 109399 GCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGC 109458 || |||| || | ||| ||||| || ||||| | || |||||| | || | |||| Sbjct 4965800 GCTTTCGTTCGTAAATAGTACATTCCTGTTTTTAACCCCTTCTTCCAGCCATAAAAATGC 4965859 Query 109459 ATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGA 109518 || | |||||| || ||| | | ||| || | ||||| |||||||||| Sbjct 4965860 ATACTCGTGAGTTTTCCTGCAGTAGGATTTTTCATGAAAATATTCATACTCTGAGACTGA 4965919 Query 109519 TCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAG 109578 || || | || ||||| ||||| |||||||| || ||| ||||||||| | ||||||| Sbjct 4965920 TCAATATAACGGCCACGGTCAGCTGCCATGTCAATAATAACCTTTTGGCTCAATTCCCAG 4965979 Query 109579 ACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCA 109638 ||||||| || | || || | || | |||||| || ||||||||||||||||||| Sbjct 4965980 GCAGTCTTATATATATCTTTCAGCTCCTTGGGAATCTCGGGGATGTTTTGAATAGAGCCA 4966039 Query 109639 CCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCG 109698 | | | | || | || | | || || || ||| || | | | || || Sbjct 4966040 TCCTCGCTAATAATCATATTCCTGATATCATTATTCCACAGCCTAAGTTGCACAAGGTCC 4966099 Query 109699 TCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGT--GTGCGTCGGAGGTAGA 109756 | || || | || |||||| || |||||||||| |||| || ||| | |||| Sbjct 4966100 TTCACTAGGTACTCGTTGACAACTTGGAATTCACCAGAAAGTACACGCCTCGCA--TAGA 4966157 Query 109757 TGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTG 109816 | || | ||| ||||| || || ||||| || || ||||| | || ||||||| Sbjct 4966158 TATTCGATGTGATTGGTTCAAAGCATTCATTAAAACCAAGAATTTGCGATGTTGAAGCTG 4966217 Query 109817 TGGGCATGGGAGC 109829 ||||||| || || Sbjct 4966218 TGGGCATTGGTGC 4966230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975970551200