Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq2 140 4e-28
seq1 131 2e-25
>seq2
Length=4956242
Score = 140 bits (154), Expect = 4e-28
Identities = 1041/1663 (63%), Gaps = 53/1663 (3%)
Strand=Plus/Minus
Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559
||||| || ||| |||||||| || | |||||||||| ||||| || |||||
Sbjct 3634305 GTTCAAAGATTGACTTTGATCGATAAAGGCAGCACGATCAGCAGCCATATCAATGATTGT 3634246
Query 109560 CTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCAC 109619
||| || || ||||| |||||||| ||||| ||||||||| || || ||||
Sbjct 3634245 CTTCTGAGAAAGCTCCCAAACAGTCTTATACAATGCCTTGATATCCTCAGGGATGTTAGG 3634186
Query 109620 GATGTTTTGAATAGAGCCACCAGCCTTCACCATGAG---ATCCTTCATCT-CTTTCGACC 109675
|| || |||||||| |||| || | || | || |||||| | || || ||
Sbjct 3634185 AATATTCTGAATAGA---ACCATTGTTGGCAATAATTCTATTCTTCATGTTCTCTCC-CC 3634130
Query 109676 AGAGACCGACCTTTTTGAGATCGT-CAACAAGATGCTTG-TTGACCACGACAAATTCACC 109733
| || || | | || || | |||||| ||| || || | ||||||||
Sbjct 3634129 ACAGTCCCAAATCGACAAGGTCCTTCAACAACCA--TTGATTAACAATTTGGAATTCACC 3634072
Query 109734 AGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCC 109793
||||| | || ||||||||| | ||||| ||||||||||| || ||||| ||
Sbjct 3634071 GGCAAGAACTCTACGAGAGTAGATGTTGGATGTGTAAGGTTCGAAACATTCGTTGTTACC 3634012
Query 109794 TAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACC 109853
|| ||||||| || || || || ||||| ||||| | |||||| ||||| |||||
Sbjct 3634011 AAGAATTTGTGATGTTGAGGCAGTAGGCATAGGAGCAACGAGAAGGGAGTTTCTCAGACC 3633952
Query 109854 CTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTC 109913
| | | | | || | || |||| || | || || | | |
Sbjct 3633951 ATGCTTAGCCATCTTCTTCTTGAGAGCAGCCCAGTCCCAGAGATCAGTGGGAGTGAT--- 3633895
Query 109914 ACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTC 109973
|||||||| ||| ||| | | ||||| | ||||||||||| | | || ||||
Sbjct 3633894 ---ATCCCACAAATCAAATTGCAAAAGACCCTTTGAGGCAGGAGAACCTTGGTAAGTCTC 3633838
Query 109974 GTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGT 110033
|| | || | | ||||| | || |||| || | || |||||||| || ||
Sbjct 3633837 ATAGGGTCCGTACAATTCGGCGAGTTCAACCGAAGATTCAACAGCAGCATGATAGATGGT 3633778
Query 110034 CTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAG 110093
|||| ||| ||| | |||| | | ||| ||||||| || | || |
Sbjct 3633777 CTCAGCAATTTGAACGTTCAATTGCTTGGCCTCAGGGGAGTCGAATGGCAAACGGAGAGC 3633718
Query 110094 AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGA 110153
||||| |||| || | ||| |||| ||| ||| ||||||| | || | ||
Sbjct 3633717 CATAAAGGCATCGGCCAAACCTTGAATACCAAGAGCAATGGGTCTGTGACGGAAATT--- 3633661
Query 110154 GCGTCGAGCAGTTTCT---ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTT 110210
|| || ||| ||| || ||||||||||| | ||| || | ||| | || |
Sbjct 3633660 GCTTCTTTCAGCTTCCTTGACAGGGTAAAAGTTTCTGTCAATAATAACATTCAAGTTTCT 3633601
Query 110211 CGTCACAGTCTTCGTGATTTCATGGAGTTTGTC---GTAAT----CGAACGTTT-TCGTC 110262
|| ||| ||| | | || || ||||||| || || | ||| || || ||
Sbjct 3633600 AGTGACAACCTTGGCAACCTCGTGAAGTTTGTTAAAGTTATACCACAAACCTTCCTCATC 3633541
Query 110263 TCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCT 110322
| || || | || |||| | || || | ||| || || | | || ||
Sbjct 3633540 ACTTTCA--ACGAAAGCAGGTAGAGACAACGATGCCAAATTACAGACGGCAACTTCTTCA 3633483
Query 110323 TTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTC 110382
| ||| || | |||||| ||||||||||| ||| || |||||||||
Sbjct 3633482 GGAGAAGAGTACTCAACAATTTCACAGCACAAGTTGGAGGACTTGATAGTACCCAAGTTT 3633423
Query 110383 TTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCC 110442
| || || ||| || || ||||||||||| |||||| ||||| ||||||| ||
Sbjct 3633422 TGTTGGTTACTCTTGCTATTACAAGCATCCTTATAAAGCATGAATGGGTTACCAGTCTCA 3633363
Query 110443 GTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGA 110502
|| || | | |||||| || | ||| | | ||| || ||| | | |
Sbjct 3633362 GTTTGAGCTTCGAGAATAGCATACCACAGCTTTTGGGCCTTGATGGTTCTTCTGCCTCTA 3633303
Query 110503 CCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGA 110562
||||||| ||||||||| || | | | || || | || || |||||| |
Sbjct 3633302 CCTTCCTTCTCGTACTTCTCATAAAGAGCAACGAACTCGTCACCATAGACATCATCCAAG 3633243
Query 110563 CCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCT--CCTCAACCCTCTTCA 110620
|| || | |||||| | | | ||||| || | | ||| || |||||||
Sbjct 3633242 CCAGGACACTCATTGGGACACATCAAAGTCCAAT--CCTCGTTAGCCTTGACTCTCTTCA 3633185
Query 110621 TGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCAC 110680
|||||| |||||||||||| | ||| |||| | || | | ||| | ||||| | ||
Sbjct 3633184 TGAACAAGTCAGGAATCCATAGAGCCAAGAACAAATCTCTGGCACGGACTTCTTCCTTAC 3633125
Query 110681 CTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGA 110740
| || || || ||||| | || || | | ||| ||||| || || | || |
Sbjct 3633124 CGTGATTCTTTCGCAGCTCAATGAATTCAAAAACATCATCATGCCAAGGCTCCAAGTACA 3633065
Query 110741 CAGCGA-------TGGATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCA 110793
|| | ||| || |||| || || |||| | |||||| | || || |
Sbjct 3633064 TGGCAAAAGCACCTGG-TCGCTTATTACCAC---CCTGATCAACATATCTAGCAGTATTA 3633009
Query 110794 TTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTG 110853
||||| || || | ||| |||| ||| || | || ||| || || || ||| |
Sbjct 3633008 TTGAAAACTCTCAACATGGGAACAATACCGTTTGAGGTACCGTTAGTTCCAGCAATGTAG 3632949
Query 110854 GACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATT 110913
|| | | ||||| || | || | | || |||||||||||| || |||| |||
Sbjct 3632948 GAGCCAGTAGCACGGATATTATGAACACTCAAACCAATACCACCAGCAGACTTTGAAATC 3632889
Query 110914 TGTGCAC-ACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAAT 110972
|||| | ||| | | ||| | ||||| ||||| || ||||| |||| || ||
Sbjct 3632888 AAGGCACAAGTCT-TCAAAGTATCGTAAATGCCATCTATAGAATCGTCCTTCATGTTAAC 3632830
Query 110973 TAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGC 111032
| |||||||| ||||| ||||| || || || |||||| | || || || | ||
Sbjct 3632829 CAAGAAGCAAGAGGACATTTGAGGCTTGGGAGTACCAGCATTGTACAGAGTGGGGGAGGC 3632770
Query 111033 ATGAATGAACAGAC-CTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTT 111091
||| | || | || ||| ||||| | ||||||||| || | || || | |||
Sbjct 3632769 ATGTGT-AAAATACTTTTGAGACATGTAGTTGTATGTTTCAATGGCCTTGGTGATATCAG 3632711
Query 111092 TACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGG 111134
||| |||||||||| || |||| ||||| ||| | ||| ||
Sbjct 3632710 AACCATGAATACCAACAGCTACTCTCATGATCATGTGTTGGGG 3632668
>seq1
Length=5930846
Score = 131 bits (144), Expect = 2e-25
Identities = 290/433 (67%), Gaps = 4/433 (1%)
Strand=Plus/Plus
Query 109399 GCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGC 109458
|| |||| || | ||| ||||| || ||||| | || |||||| | || | ||||
Sbjct 4965800 GCTTTCGTTCGTAAATAGTACATTCCTGTTTTTAACCCCTTCTTCCAGCCATAAAAATGC 4965859
Query 109459 ATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGA 109518
|| | |||||| || ||| | | ||| || | ||||| ||||||||||
Sbjct 4965860 ATACTCGTGAGTTTTCCTGCAGTAGGATTTTTCATGAAAATATTCATACTCTGAGACTGA 4965919
Query 109519 TCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAG 109578
|| || | || ||||| ||||| |||||||| || ||| ||||||||| | |||||||
Sbjct 4965920 TCAATATAACGGCCACGGTCAGCTGCCATGTCAATAATAACCTTTTGGCTCAATTCCCAG 4965979
Query 109579 ACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCA 109638
||||||| || | || || | || | |||||| || |||||||||||||||||||
Sbjct 4965980 GCAGTCTTATATATATCTTTCAGCTCCTTGGGAATCTCGGGGATGTTTTGAATAGAGCCA 4966039
Query 109639 CCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCG 109698
| | | | || | || | | || || || ||| || | | | || ||
Sbjct 4966040 TCCTCGCTAATAATCATATTCCTGATATCATTATTCCACAGCCTAAGTTGCACAAGGTCC 4966099
Query 109699 TCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGT--GTGCGTCGGAGGTAGA 109756
| || || | || |||||| || |||||||||| |||| || ||| | ||||
Sbjct 4966100 TTCACTAGGTACTCGTTGACAACTTGGAATTCACCAGAAAGTACACGCCTCGCA--TAGA 4966157
Query 109757 TGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTG 109816
| || | ||| ||||| || || ||||| || || ||||| | || |||||||
Sbjct 4966158 TATTCGATGTGATTGGTTCAAAGCATTCATTAAAACCAAGAATTTGCGATGTTGAAGCTG 4966217
Query 109817 TGGGCATGGGAGC 109829
||||||| || ||
Sbjct 4966218 TGGGCATTGGTGC 4966230
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588975970551200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |