Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2 150 2e-31 seq1 104 3e-17 >seq2 Length=4956242 Score = 150 bits (166), Expect = 2e-31 Identities = 1067/1691 (63%), Gaps = 69/1691 (4%) Strand=Plus/Minus Query 105596 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTG 105655 |||||||| || ||||| || || | || ||| |||| | ||||||| || | ||| Sbjct 3634391 TAGTACATTCCTGTCTTAAGACCCTTTTGCCAGCCGTAGAAATGCATACTAGTCAATTTG 3634332 Query 105656 GACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAGCGACCA 105715 ||| || ||| || ||| ||| |||| | |||||| || || || ||| | || Sbjct 3634331 CCCATAGTAGGAGCTTGAATGTAAATGTTCAAAGATTGACTTTGATCGATAAAGGCAGCA 3634272 Query 105716 CGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAGAGA 105775 || | || ||||||||||||| |||| | ||||| || || || | Sbjct 3634271 CGATCAGCAGCCATATCAATGATTGTCTTCTGAGAAAGCTCCCAAACAGTCTTATACAAT 3634212 Query 105776 TTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCTTGACCATG 105835 ||||||||| || ||||| | | ||||| ||||| ||||| ||| | || Sbjct 3634211 GCCTTGATATCCTCAGGGATGTTAGGAATATTCTGAATAGAACCATTG---TTGGCAATA 3634155 Query 105836 AG---ATCCTTCATATCCTTGGACCAAAGACC--AATCTTCTTGAGATCATTGACGAGAT 105890 | || |||||| | || ||| || || |||| | || || || | | | Sbjct 3634154 ATTCTATTCTTCATGTTCTCTCCCCACAGTCCCAAATCGACA--AGGTCCTTCAACA-AC 3634098 Query 105891 GCTTG-TTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGA-TAGATGTTCGTCGT 105948 ||| || ||||| || || || || || ||| | ||| |||||||| | || Sbjct 3634097 CATTGATTAACAATTTGGAATTCACCGGCAAGAACTCTACG-AGAGTAGATGTTGGATGT 3634039 Query 105949 GTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGG 106008 ||| ||||| || ||||| || ||||| | ||||||| || ||||| || ||||| || Sbjct 3634038 GTAAGGTTCGAAACATTCGTTGTTACCAAGAATTTGTGATGTTGAGGCAGTAGGCATAGG 3633979 Query 106009 TGCCATCAAAAGACTGTTACGAAGACC---CTTTTCCTTGATGCGTTCCTTGAGAACATC 106065 || | | ||| ||| | ||||| ||| || | | | ||||||| || | Sbjct 3633978 AGCAACGAGAAGGGAGTTTCTCAGACCATGCTTAGCCATCTTC---TTCTTGAGAGCAGC 3633922 Query 106066 CCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATATCAAATTG--AAGCACCCCTT 106121 |||||| || || | | || | | | |||||| ||||||||| || |||| || Sbjct 3633921 CCAGTCCCAGA-GATCAGTGGGAGTGATAT-CCCACAAATCAAATTGCAAAAGACCCTTT 3633864 Query 106122 GGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGC 106181 | | | |||||||| | | |||||||||| || | ||| || | |||| Sbjct 3633863 GAGGCA--GGAGAACCTTGGTAAGTCTCATAGGGTCCGTACAATTCGGCGAGTTCAACCG 3633806 Query 106182 TCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTT 106241 | || | | || ||||| ||||| ||| || || | |||| | |||||| | Sbjct 3633805 AAGATTCAACAGCAGCATGATAGATGGTCTCAGCAATTTGAACGTTCAATTGCTTGGCCT 3633746 Query 106242 CATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCA 106301 || || || |||| | ||| ||||| |||| || | |||||||| ||| | Sbjct 3633745 CAGGGGAGTCGAATGGCAAACGGAGAGCCATAAAGGCATCGGCCAAACCTTGAATACCAA 3633686 Query 106302 AACCAATAGGTCTGTGTCGCATATTAGA-CTTTCGCGCAGTCTCAACGGGATAAAAATTT 106360 | |||| |||||||| || | ||| ||||| || || || || ||||| ||| Sbjct 3633685 GAGCAATGGGTCTGTGACGGAAATTGCTTCTTTCA-GCTTCCTTGACAGGGTAAAAGTTT 3633627 Query 106361 CTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCA 106420 |||||||| | || | ||| | || |||| ||| | | || |||||||| | | Sbjct 3633626 CTGTCAATAATAACATTCAAGTTTCTAGTGACAACCTTGGCAACCTCGTGAAGTTTGTTA 3633567 Query 106421 TAAT-------CAAAAGTGCGAGTCTCTTCATTGACAT---ACTTTGGAAGGGCGATTGA 106470 | | |||| | | ||| ||| | || | || || | | || Sbjct 3633566 AAGTTATACCACAAACCTTC----CTCATCACTTTCAACGAAAGCAGGTAGAGACAACGA 3633511 Query 106471 TGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAA 106530 ||||||||| || || || || || | | |||||| | |||||| ||||| Sbjct 3633510 TGCCAAATTACAGACGGCAACTTCTTCAGGAGAAGAGTACTCAACAATTTCACAGCACAA 3633451 Query 106531 GTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTT 106590 |||||| ||| || || ||||| || | |||||||||||| | || || |||||||| Sbjct 3633450 GTTGGAGGACTTGATAGTACCCAAGTTTTGTTGGTTACTCTTGCTATTACAAGCATCCTT 3633391 Query 106591 GTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CAT 106649 || |||||| | || | || ||||| || || | | |||||| || | ||||| | | Sbjct 3633390 ATAAAGCATGAATGGGTTACCAGTCTCAGTTTGAGCTTCGAGAATAGCATACCACAGCTT 3633331 Query 106650 CGGCGGCTGGTACAATGG--CGT-TGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGG 106706 | | || | |||| | | || | | || ||| ||||||||| || || | Sbjct 3633330 TTGGGCCTTG----ATGGTTCTTCTGCCTCTACCTTCCTTCTCGTACTTCTCATAAAGAG 3633275 Query 106707 CTTCAAACTCCTCACC---CACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAA 106763 | | ||||| ||||| || | || || || || || | ||||| | | Sbjct 3633274 CAACGAACTCGTCACCATAGACATCATCCAAG---CCAGGACACTCATTGGGACACATCA 3633218 Query 106764 GAGACCATTGACCACCCT--CCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGA 106821 || ||| | || | | ||| || | ||||||||| | ||| |||||||| || | Sbjct 3633217 AAGTCCAAT--CCTCGTTAGCCTTGACTCTCTTCATGAACAAGTCAGGAATCCATAGAGC 3633160 Query 106822 TGAAAAGAGATCTCT-ACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGA 106880 | || | |||||| ||| || | ||||| | ||| || || ||| | ||||| || Sbjct 3633159 CAAGAACAAATCTCTGGCACGGA-CTTCTTCCTTACCGTGATTCTTTCGCAGCTCAATGA 3633101 Query 106881 ACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---AC 106937 | || | | ||| | ||||| ||||| | || | || | || || ||| | Sbjct 3633100 ATTCAAAAACATCATCATGCCAAGGCTCCAAGTACATGGCAAAAGCACCTGGTCGCTTAT 3633041 Query 106938 GCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATAC 106997 ||| | |||| ||||| | || || || || || | | ||| |||| ||||| Sbjct 3633040 TACCACCCTGATCAACATATCTAGCAGTATTATTGAAAACTCTCAACATGGGAACAATAC 3632981 Query 106998 CATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGT 107057 | | ||| ||| || || || ||| || | | || | | || ||| | Sbjct 3632980 CGTTTGAGGTACCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCACGGATATTATGAACAC 3632921 Query 107058 GCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGA 107117 || |||||||| ||||| ||||||| || ||||| | | | ||| | || | Sbjct 3632920 TCAAACCAATACCACCAGCAGACTTTGAAATCAAGGCACAAGTCTTCAAAGTATCGTAAA 3632861 Query 107118 TACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTG 107177 | || | || || || ||||| || | | ||||||| |||||| || || | | Sbjct 3632860 TGCCATCTATAGAATCGTCCTTCATGTTAACCAAGAAGCAAGAGGACATTTGAGGCTTGG 3632801 Query 107178 GTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGACATCTTG 107236 | |||||||||||| | || || || | || || | || |||| ||| ||||| | | Sbjct 3632800 GAGTACCAGCATTGTACAGAGTGGGGGAGGCATGTGT-AAAATACTTTTGAGACATGTAG 3632742 Query 107237 TCGTATGTCTC 107247 | |||||| || Sbjct 3632741 TTGTATGTTTC 3632731 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| | || ||||| || || || | ||| |||||||| || || Sbjct 3220016 GCAAAATCGGTGTGCATGCCTTCATCACGCGAGATCAATTCGTTTGAGAACGTCAGACCA 3219957 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 |||||||| || |||||||||||||| | ||| | ||||| || |||||||||||| Sbjct 3219956 GGCATGAGTCCACGCTTCTTCAACCAGAAGATACTGGCAAATGATCCAGAGAAGAAGATA 3219897 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGA--GACTTTGTGTCAA 117451 ||||| || ||||| |||| || ||||| || || | | || || | | ||| Sbjct 3219896 CCCTCAACGGCAGCAAAGGCAACGAGACGCTCAGCAAAAGTG-GACTGATCATCAG-CAA 3219839 Query 117452 ACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGG 117491 |||| | ||||| | |||||||||| ||||||||| Sbjct 3219838 TCCATCGGAGAGCCCAGTCAGCCTTCTTCTTAATACATGG 3219799 >seq1 Length=5930846 Score = 104 bits (114), Expect = 3e-17 Identities = 282/432 (65%), Gaps = 0/432 (0%) Strand=Plus/Plus Query 105580 TGCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATG 105639 ||| || | ||| | ||||||||| || || || | || | ||||| | || | ||| Sbjct 4965799 TGCTTTCGTTCGTAAATAGTACATTCCTGTTTTTAACCCCTTCTTCCAGCCATAAAAATG 4965858 Query 105640 CATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTG 105699 |||| | ||| || || ||| ||| |||||||| ||||||||| ||| ||| Sbjct 4965859 CATACTCGTGAGTTTTCCTGCAGTAGGATTTTTCATGAAAATATTCATACTCTGAGACTG 4965918 Query 105700 GTCAATGAAGCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCA 105759 ||||| | || ||||| | || ||||| ||||| | | |||| | | |||||| Sbjct 4965919 ATCAATATAACGGCCACGGTCAGCTGCCATGTCAATAATAACCTTTTGGCTCAATTCCCA 4965978 Query 105760 CACTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACC 105819 | || || | || || | || | || || || | ||| |||||||| || || Sbjct 4965979 GGCAGTCTTATATATATCTTTCAGCTCCTTGGGAATCTCGGGGATGTTTTGAATAGAGCC 4966038 Query 105820 CCCCGCCTTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATC 105879 || | | | || | || | | ||||| || ||| || | || | | || || Sbjct 4966039 ATCCTCGCTAATAATCATATTCCTGATATCATTATTCCACAGCCTAAGTTGCACAAGGTC 4966098 Query 105880 ATTGACGAGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGAT 105939 || || || | || |||||||| || || || | || | ||| |||||| Sbjct 4966099 CTTCACTAGGTACTCGTTGACAACTTGGAATTCACCAGAAAGTACACGCCTCGCATAGAT 4966158 Query 105940 GTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGT 105999 |||| ||| |||||||||||||||||| ||| | ||||| | || || ||||| Sbjct 4966159 ATTCGATGTGATTGGTTCAAAGCATTCATTAAAACCAAGAATTTGCGATGTTGAAGCTGT 4966218 Query 106000 TGGCATTGGTGC 106011 ||||||||||| Sbjct 4966219 GGGCATTGGTGC 4966230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980770500960